Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18630 and CA264_18635 are separated by 36 nucleotides CA264_18635 and CA264_18640 are separated by 83 nucleotides CA264_18640 and CA264_18645 are separated by 145 nucleotides
CA264_18630: CA264_18630 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 4,332,090 to 4,333,613
_18630
CA264_18635: CA264_18635 - phosphoribosylglycinamide formyltransferase, at 4,333,650 to 4,334,237
_18635
CA264_18640: CA264_18640 - ATPase, at 4,334,321 to 4,334,704
_18640
CA264_18645: CA264_18645 - haloacid dehalogenase, at 4,334,850 to 4,335,674
_18645
Position (kb)
4334
4335 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4333.333 kb on + strand, within CA264_18630 at 4333.430 kb on + strand, within CA264_18630 at 4333.455 kb on + strand, within CA264_18630 at 4333.513 kb on + strand at 4333.513 kb on + strand at 4333.513 kb on + strand at 4333.514 kb on - strand at 4333.514 kb on - strand at 4333.573 kb on + strand at 4333.637 kb on - strand at 4333.651 kb on + strand at 4333.678 kb on - strand at 4333.807 kb on + strand, within CA264_18635 at 4333.891 kb on + strand, within CA264_18635 at 4333.891 kb on + strand, within CA264_18635 at 4333.892 kb on - strand, within CA264_18635 at 4333.892 kb on - strand, within CA264_18635 at 4333.914 kb on + strand, within CA264_18635 at 4333.914 kb on + strand, within CA264_18635 at 4333.914 kb on + strand, within CA264_18635 at 4333.914 kb on + strand, within CA264_18635 at 4334.102 kb on - strand, within CA264_18635 at 4334.228 kb on + strand at 4334.229 kb on - strand at 4334.252 kb on - strand at 4334.267 kb on - strand at 4334.276 kb on + strand at 4334.283 kb on + strand at 4334.284 kb on - strand at 4334.284 kb on - strand at 4334.304 kb on + strand at 4334.304 kb on + strand at 4334.358 kb on + strand at 4334.440 kb on - strand, within CA264_18640 at 4334.590 kb on + strand, within CA264_18640 at 4334.652 kb on + strand, within CA264_18640 at 4334.652 kb on + strand, within CA264_18640 at 4334.682 kb on + strand at 4334.685 kb on + strand at 4334.712 kb on + strand at 4334.712 kb on + strand at 4334.713 kb on - strand at 4334.713 kb on - strand at 4334.722 kb on + strand at 4334.722 kb on + strand at 4334.723 kb on - strand at 4334.723 kb on - strand at 4334.733 kb on + strand at 4334.734 kb on - strand at 4334.777 kb on + strand at 4334.780 kb on - strand at 4334.804 kb on + strand at 4334.804 kb on + strand at 4334.809 kb on + strand at 4334.809 kb on + strand at 4334.832 kb on - strand at 4334.834 kb on + strand at 4334.838 kb on + strand at 4334.839 kb on - strand at 4334.839 kb on - strand at 4334.839 kb on - strand at 4334.839 kb on - strand at 4334.869 kb on - strand at 4334.870 kb on + strand at 4334.871 kb on - strand at 4334.880 kb on + strand at 4334.892 kb on + strand at 4334.892 kb on + strand at 4334.892 kb on + strand at 4334.986 kb on - strand, within CA264_18645 at 4334.986 kb on - strand, within CA264_18645 at 4334.995 kb on + strand, within CA264_18645 at 4334.996 kb on - strand, within CA264_18645 at 4335.035 kb on + strand, within CA264_18645 at 4335.036 kb on - strand, within CA264_18645 at 4335.104 kb on - strand, within CA264_18645 at 4335.142 kb on + strand, within CA264_18645 at 4335.142 kb on + strand, within CA264_18645 at 4335.142 kb on + strand, within CA264_18645 at 4335.142 kb on + strand, within CA264_18645 at 4335.142 kb on + strand, within CA264_18645 at 4335.143 kb on - strand, within CA264_18645 at 4335.143 kb on - strand, within CA264_18645 at 4335.243 kb on + strand, within CA264_18645 at 4335.325 kb on + strand, within CA264_18645 at 4335.326 kb on - strand, within CA264_18645 at 4335.343 kb on + strand, within CA264_18645 at 4335.408 kb on + strand, within CA264_18645 at 4335.409 kb on - strand, within CA264_18645 at 4335.409 kb on - strand, within CA264_18645 at 4335.466 kb on + strand, within CA264_18645 at 4335.467 kb on - strand, within CA264_18645 at 4335.467 kb on - strand, within CA264_18645 at 4335.476 kb on + strand, within CA264_18645 at 4335.580 kb on + strand, within CA264_18645 at 4335.646 kb on - strand at 4335.646 kb on - strand at 4335.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 4,333,333 + CA264_18630 0.82 -1.0 4,333,430 + CA264_18630 0.88 -1.0 4,333,455 + CA264_18630 0.90 -1.8 4,333,513 + -0.7 4,333,513 + +0.1 4,333,513 + -0.4 4,333,514 - +0.1 4,333,514 - +0.6 4,333,573 + -0.6 4,333,637 - +0.3 4,333,651 + +0.7 4,333,678 - -0.6 4,333,807 + CA264_18635 0.27 -0.1 4,333,891 + CA264_18635 0.41 +1.0 4,333,891 + CA264_18635 0.41 -0.1 4,333,892 - CA264_18635 0.41 -0.8 4,333,892 - CA264_18635 0.41 +0.2 4,333,914 + CA264_18635 0.45 +1.0 4,333,914 + CA264_18635 0.45 -0.1 4,333,914 + CA264_18635 0.45 +0.2 4,333,914 + CA264_18635 0.45 +0.0 4,334,102 - CA264_18635 0.77 +0.4 4,334,228 + -0.5 4,334,229 - +0.9 4,334,252 - -0.3 4,334,267 - -0.5 4,334,276 + -0.4 4,334,283 + -0.3 4,334,284 - +0.1 4,334,284 - -0.1 4,334,304 + -0.6 4,334,304 + +1.5 4,334,358 + -0.7 4,334,440 - CA264_18640 0.31 -0.2 4,334,590 + CA264_18640 0.70 -0.3 4,334,652 + CA264_18640 0.86 -0.1 4,334,652 + CA264_18640 0.86 -0.4 4,334,682 + -0.5 4,334,685 + -0.4 4,334,712 + -1.5 4,334,712 + -0.0 4,334,713 - -0.6 4,334,713 - -0.3 4,334,722 + -0.4 4,334,722 + -0.0 4,334,723 - +1.3 4,334,723 - +0.7 4,334,733 + -0.3 4,334,734 - +0.2 4,334,777 + -0.3 4,334,780 - +0.1 4,334,804 + -1.0 4,334,804 + +0.9 4,334,809 + -0.9 4,334,809 + -0.1 4,334,832 - -0.2 4,334,834 + -0.1 4,334,838 + -0.3 4,334,839 - +1.8 4,334,839 - -0.3 4,334,839 - -0.8 4,334,839 - +0.8 4,334,869 - -0.5 4,334,870 + +0.6 4,334,871 - -0.3 4,334,880 + -1.5 4,334,892 + -1.6 4,334,892 + -1.2 4,334,892 + +0.9 4,334,986 - CA264_18645 0.16 -0.0 4,334,986 - CA264_18645 0.16 +0.2 4,334,995 + CA264_18645 0.18 +0.9 4,334,996 - CA264_18645 0.18 +0.5 4,335,035 + CA264_18645 0.22 -0.0 4,335,036 - CA264_18645 0.23 -1.3 4,335,104 - CA264_18645 0.31 +0.2 4,335,142 + CA264_18645 0.35 -0.1 4,335,142 + CA264_18645 0.35 -0.1 4,335,142 + CA264_18645 0.35 -0.5 4,335,142 + CA264_18645 0.35 -0.2 4,335,142 + CA264_18645 0.35 -1.2 4,335,143 - CA264_18645 0.36 -0.1 4,335,143 - CA264_18645 0.36 -0.4 4,335,243 + CA264_18645 0.48 -0.6 4,335,325 + CA264_18645 0.58 -0.2 4,335,326 - CA264_18645 0.58 +1.0 4,335,343 + CA264_18645 0.60 -1.2 4,335,408 + CA264_18645 0.68 -1.8 4,335,409 - CA264_18645 0.68 +0.1 4,335,409 - CA264_18645 0.68 -0.0 4,335,466 + CA264_18645 0.75 -0.5 4,335,467 - CA264_18645 0.75 +1.1 4,335,467 - CA264_18645 0.75 -0.7 4,335,476 + CA264_18645 0.76 +0.2 4,335,580 + CA264_18645 0.88 +0.2 4,335,646 - +0.5 4,335,646 - -0.7 4,335,646 - +0.7
Or see this region's nucleotide sequence