Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17690

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17680 and CA264_17685 are separated by 105 nucleotidesCA264_17685 and CA264_17690 are separated by 27 nucleotidesCA264_17690 and CA264_17695 are separated by 512 nucleotides CA264_17680: CA264_17680 - CoB--CoM heterodisulfide reductase, at 4,114,313 to 4,115,095 _17680 CA264_17685: CA264_17685 - hypothetical protein, at 4,115,201 to 4,115,683 _17685 CA264_17690: CA264_17690 - hypothetical protein, at 4,115,711 to 4,117,660 _17690 CA264_17695: CA264_17695 - phosphoribosylformylglycinamidine cyclo-ligase, at 4,118,173 to 4,119,342 _17695 Position (kb) 4115 4116 4117 4118Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4114.751 kb on + strand, within CA264_17680at 4114.752 kb on - strand, within CA264_17680at 4114.775 kb on + strand, within CA264_17680at 4114.776 kb on - strand, within CA264_17680at 4114.837 kb on - strand, within CA264_17680at 4114.990 kb on + strand, within CA264_17680at 4115.093 kb on + strandat 4115.094 kb on - strandat 4115.096 kb on + strandat 4115.141 kb on + strandat 4115.176 kb on - strandat 4115.176 kb on - strandat 4115.178 kb on + strandat 4115.179 kb on - strandat 4115.186 kb on + strandat 4115.187 kb on - strandat 4115.187 kb on - strandat 4115.198 kb on - strandat 4115.206 kb on + strandat 4115.434 kb on + strand, within CA264_17685at 4115.435 kb on - strand, within CA264_17685at 4115.435 kb on - strand, within CA264_17685at 4115.473 kb on + strand, within CA264_17685at 4115.474 kb on - strand, within CA264_17685at 4115.587 kb on + strand, within CA264_17685at 4115.587 kb on + strand, within CA264_17685at 4115.588 kb on - strand, within CA264_17685at 4115.588 kb on - strand, within CA264_17685at 4115.592 kb on + strand, within CA264_17685at 4115.592 kb on + strand, within CA264_17685at 4115.594 kb on + strand, within CA264_17685at 4115.594 kb on + strand, within CA264_17685at 4115.594 kb on + strand, within CA264_17685at 4115.595 kb on - strand, within CA264_17685at 4115.595 kb on - strand, within CA264_17685at 4115.595 kb on - strand, within CA264_17685at 4115.595 kb on - strand, within CA264_17685at 4115.595 kb on - strand, within CA264_17685at 4115.615 kb on - strand, within CA264_17685at 4115.618 kb on + strand, within CA264_17685at 4115.698 kb on - strandat 4115.702 kb on + strandat 4115.702 kb on + strandat 4115.702 kb on + strandat 4115.703 kb on - strandat 4115.810 kb on - strandat 4115.853 kb on - strandat 4115.853 kb on - strandat 4115.863 kb on + strandat 4115.864 kb on - strandat 4115.870 kb on + strandat 4115.874 kb on - strandat 4115.918 kb on + strand, within CA264_17690at 4115.918 kb on + strand, within CA264_17690at 4115.976 kb on - strand, within CA264_17690at 4115.977 kb on + strand, within CA264_17690at 4115.978 kb on - strand, within CA264_17690at 4115.999 kb on + strand, within CA264_17690at 4116.017 kb on + strand, within CA264_17690at 4116.017 kb on + strand, within CA264_17690at 4116.020 kb on + strand, within CA264_17690at 4116.026 kb on + strand, within CA264_17690at 4116.026 kb on + strand, within CA264_17690at 4116.027 kb on - strand, within CA264_17690at 4116.027 kb on - strandat 4116.027 kb on - strand, within CA264_17690at 4116.087 kb on - strand, within CA264_17690at 4116.240 kb on - strand, within CA264_17690at 4116.381 kb on - strand, within CA264_17690at 4116.422 kb on - strand, within CA264_17690at 4116.495 kb on + strand, within CA264_17690at 4116.615 kb on - strand, within CA264_17690at 4116.659 kb on + strand, within CA264_17690at 4116.659 kb on + strand, within CA264_17690at 4116.722 kb on - strand, within CA264_17690at 4116.774 kb on - strand, within CA264_17690at 4116.774 kb on - strand, within CA264_17690at 4116.908 kb on + strand, within CA264_17690at 4116.908 kb on + strand, within CA264_17690at 4116.909 kb on - strand, within CA264_17690at 4116.991 kb on + strand, within CA264_17690at 4116.992 kb on - strand, within CA264_17690at 4117.017 kb on - strand, within CA264_17690at 4117.105 kb on + strand, within CA264_17690at 4117.109 kb on - strand, within CA264_17690at 4117.266 kb on + strand, within CA264_17690at 4117.469 kb on + strandat 4117.648 kb on + strandat 4117.649 kb on - strandat 4117.650 kb on + strandat 4117.651 kb on - strandat 4117.658 kb on + strandat 4117.668 kb on - strandat 4117.692 kb on + strandat 4117.696 kb on + strandat 4117.697 kb on - strandat 4117.697 kb on - strandat 4117.698 kb on + strandat 4117.699 kb on - strandat 4117.744 kb on - strandat 4117.744 kb on - strandat 4117.944 kb on + strandat 4117.944 kb on + strandat 4117.944 kb on + strandat 4117.945 kb on - strandat 4118.061 kb on - strandat 4118.061 kb on - strandat 4118.107 kb on - strandat 4118.172 kb on + strandat 4118.255 kb on + strandat 4118.256 kb on - strandat 4118.312 kb on - strand, within CA264_17695at 4118.323 kb on - strand, within CA264_17695at 4118.363 kb on - strand, within CA264_17695at 4118.369 kb on - strand, within CA264_17695at 4118.467 kb on - strand, within CA264_17695at 4118.590 kb on + strand, within CA264_17695

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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4,114,751 + CA264_17680 0.56 +0.7
4,114,752 - CA264_17680 0.56 +0.8
4,114,775 + CA264_17680 0.59 +2.1
4,114,776 - CA264_17680 0.59 +1.0
4,114,837 - CA264_17680 0.67 +1.0
4,114,990 + CA264_17680 0.86 +1.9
4,115,093 + -0.5
4,115,094 - +0.1
4,115,096 + +0.0
4,115,141 + +0.7
4,115,176 - +0.7
4,115,176 - -0.4
4,115,178 + -0.4
4,115,179 - -1.1
4,115,186 + -0.6
4,115,187 - -0.3
4,115,187 - -0.1
4,115,198 - +0.5
4,115,206 + +0.4
4,115,434 + CA264_17685 0.48 +0.2
4,115,435 - CA264_17685 0.48 +1.5
4,115,435 - CA264_17685 0.48 -0.3
4,115,473 + CA264_17685 0.56 +1.3
4,115,474 - CA264_17685 0.57 +0.6
4,115,587 + CA264_17685 0.80 +1.7
4,115,587 + CA264_17685 0.80 +0.6
4,115,588 - CA264_17685 0.80 +0.8
4,115,588 - CA264_17685 0.80 +0.4
4,115,592 + CA264_17685 0.81 +0.8
4,115,592 + CA264_17685 0.81 -0.6
4,115,594 + CA264_17685 0.81 -0.2
4,115,594 + CA264_17685 0.81 -0.3
4,115,594 + CA264_17685 0.81 -2.0
4,115,595 - CA264_17685 0.82 -0.2
4,115,595 - CA264_17685 0.82 +0.3
4,115,595 - CA264_17685 0.82 +1.0
4,115,595 - CA264_17685 0.82 +0.4
4,115,595 - CA264_17685 0.82 +0.3
4,115,615 - CA264_17685 0.86 +0.2
4,115,618 + CA264_17685 0.86 +0.8
4,115,698 - +0.0
4,115,702 + -0.1
4,115,702 + -0.1
4,115,702 + +0.1
4,115,703 - +0.3
4,115,810 - -0.3
4,115,853 - -1.8
4,115,853 - -0.1
4,115,863 + -0.1
4,115,864 - +1.0
4,115,870 + -0.4
4,115,874 - +0.7
4,115,918 + CA264_17690 0.11 +0.6
4,115,918 + CA264_17690 0.11 -0.6
4,115,976 - CA264_17690 0.14 -0.0
4,115,977 + CA264_17690 0.14 +1.8
4,115,978 - CA264_17690 0.14 +1.3
4,115,999 + CA264_17690 0.15 -0.1
4,116,017 + CA264_17690 0.16 -1.0
4,116,017 + CA264_17690 0.16 -0.9
4,116,020 + CA264_17690 0.16 -0.9
4,116,026 + CA264_17690 0.16 +1.5
4,116,026 + CA264_17690 0.16 -0.3
4,116,027 - CA264_17690 0.16 -1.6
4,116,027 - +1.3
4,116,027 - CA264_17690 0.16 -1.1
4,116,087 - CA264_17690 0.19 +0.5
4,116,240 - CA264_17690 0.27 -2.2
4,116,381 - CA264_17690 0.34 +0.2
4,116,422 - CA264_17690 0.36 -0.3
4,116,495 + CA264_17690 0.40 -0.1
4,116,615 - CA264_17690 0.46 -2.0
4,116,659 + CA264_17690 0.49 -1.2
4,116,659 + CA264_17690 0.49 +0.3
4,116,722 - CA264_17690 0.52 -0.7
4,116,774 - CA264_17690 0.55 -0.5
4,116,774 - CA264_17690 0.55 -0.1
4,116,908 + CA264_17690 0.61 +0.5
4,116,908 + CA264_17690 0.61 -0.5
4,116,909 - CA264_17690 0.61 -2.9
4,116,991 + CA264_17690 0.66 +0.4
4,116,992 - CA264_17690 0.66 -0.7
4,117,017 - CA264_17690 0.67 -1.2
4,117,105 + CA264_17690 0.71 +0.5
4,117,109 - CA264_17690 0.72 -0.8
4,117,266 + CA264_17690 0.80 -0.2
4,117,469 + -1.6
4,117,648 + -0.6
4,117,649 - -0.3
4,117,650 + -0.5
4,117,651 - -1.8
4,117,658 + +0.1
4,117,668 - -0.0
4,117,692 + -0.2
4,117,696 + -0.9
4,117,697 - -0.8
4,117,697 - +0.1
4,117,698 + +0.1
4,117,699 - -0.3
4,117,744 - +0.3
4,117,744 - +1.2
4,117,944 + +0.1
4,117,944 + -0.6
4,117,944 + +1.1
4,117,945 - +0.1
4,118,061 - -0.4
4,118,061 - -0.3
4,118,107 - +0.4
4,118,172 + +0.3
4,118,255 + +0.3
4,118,256 - -0.3
4,118,312 - CA264_17695 0.12 -0.2
4,118,323 - CA264_17695 0.13 -0.1
4,118,363 - CA264_17695 0.16 -0.7
4,118,369 - CA264_17695 0.17 -0.8
4,118,467 - CA264_17695 0.25 -1.2
4,118,590 + CA264_17695 0.36 -0.8

Or see this region's nucleotide sequence