Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13905 and CA264_13910 are separated by 97 nucleotides CA264_13910 and CA264_13915 are separated by 11 nucleotides CA264_13915 and CA264_13920 are separated by 608 nucleotides
CA264_13905: CA264_13905 - hybrid sensor histidine kinase/response regulator, at 3,245,248 to 3,246,480
_13905
CA264_13910: CA264_13910 - response regulator, at 3,246,578 to 3,247,027
_13910
CA264_13915: CA264_13915 - PAS domain-containing sensor histidine kinase, at 3,247,039 to 3,248,583
_13915
CA264_13920: CA264_13920 - PutA protein, at 3,249,192 to 3,250,274
_13920
Position (kb)
3247
3248
3249 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3246.318 kb on - strand, within CA264_13905 at 3246.386 kb on + strand at 3246.431 kb on + strand at 3246.431 kb on + strand at 3246.432 kb on - strand at 3246.432 kb on - strand at 3246.480 kb on + strand at 3246.481 kb on - strand at 3246.511 kb on + strand at 3246.511 kb on + strand at 3246.511 kb on + strand at 3246.512 kb on - strand at 3246.612 kb on + strand at 3246.612 kb on + strand at 3246.612 kb on + strand at 3246.639 kb on - strand, within CA264_13910 at 3246.694 kb on - strand, within CA264_13910 at 3246.694 kb on - strand, within CA264_13910 at 3246.846 kb on + strand, within CA264_13910 at 3246.998 kb on + strand at 3246.998 kb on + strand at 3246.998 kb on + strand at 3246.998 kb on + strand at 3246.999 kb on - strand at 3246.999 kb on - strand at 3247.033 kb on + strand at 3247.033 kb on + strand at 3247.034 kb on - strand at 3247.822 kb on + strand, within CA264_13915 at 3247.867 kb on + strand, within CA264_13915 at 3247.867 kb on + strand, within CA264_13915 at 3247.870 kb on - strand, within CA264_13915 at 3247.873 kb on + strand, within CA264_13915 at 3247.873 kb on + strand, within CA264_13915 at 3248.110 kb on - strand, within CA264_13915 at 3248.252 kb on - strand, within CA264_13915 at 3248.320 kb on - strand, within CA264_13915 at 3248.345 kb on + strand, within CA264_13915 at 3248.345 kb on + strand, within CA264_13915 at 3248.485 kb on + strand at 3248.485 kb on - strand at 3248.493 kb on + strand at 3248.493 kb on + strand at 3248.496 kb on + strand at 3248.519 kb on - strand at 3248.589 kb on - strand at 3248.605 kb on + strand at 3248.606 kb on - strand at 3248.606 kb on - strand at 3248.738 kb on + strand at 3248.802 kb on - strand at 3248.841 kb on - strand at 3248.929 kb on - strand at 3249.019 kb on + strand at 3249.034 kb on + strand at 3249.061 kb on + strand at 3249.062 kb on - strand at 3249.062 kb on - strand at 3249.062 kb on - strand at 3249.062 kb on - strand at 3249.062 kb on - strand at 3249.062 kb on - strand at 3249.069 kb on - strand at 3249.074 kb on + strand at 3249.074 kb on + strand at 3249.382 kb on - strand, within CA264_13920 at 3249.481 kb on - strand, within CA264_13920 at 3249.481 kb on - strand, within CA264_13920 at 3249.496 kb on + strand, within CA264_13920
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 3,246,318 - CA264_13905 0.87 +0.8 3,246,386 + -1.7 3,246,431 + -0.8 3,246,431 + -1.2 3,246,432 - -0.3 3,246,432 - +0.5 3,246,480 + -1.5 3,246,481 - +0.1 3,246,511 + +2.0 3,246,511 + -0.2 3,246,511 + -1.1 3,246,512 - -0.4 3,246,612 + -2.2 3,246,612 + -0.5 3,246,612 + -1.3 3,246,639 - CA264_13910 0.14 +0.9 3,246,694 - CA264_13910 0.26 -0.9 3,246,694 - CA264_13910 0.26 -1.8 3,246,846 + CA264_13910 0.60 -2.1 3,246,998 + +0.8 3,246,998 + -1.5 3,246,998 + -0.6 3,246,998 + -1.1 3,246,999 - -1.7 3,246,999 - -2.2 3,247,033 + +0.1 3,247,033 + +0.7 3,247,034 - -0.6 3,247,822 + CA264_13915 0.51 -1.2 3,247,867 + CA264_13915 0.54 -1.0 3,247,867 + CA264_13915 0.54 -2.7 3,247,870 - CA264_13915 0.54 -0.0 3,247,873 + CA264_13915 0.54 -2.7 3,247,873 + CA264_13915 0.54 -2.6 3,248,110 - CA264_13915 0.69 +1.4 3,248,252 - CA264_13915 0.79 -0.7 3,248,320 - CA264_13915 0.83 -0.6 3,248,345 + CA264_13915 0.85 -0.9 3,248,345 + CA264_13915 0.85 -0.2 3,248,485 + -3.7 3,248,485 - +0.8 3,248,493 + -1.0 3,248,493 + -1.4 3,248,496 + -1.2 3,248,519 - -2.1 3,248,589 - -0.2 3,248,605 + -2.2 3,248,606 - -1.0 3,248,606 - -2.0 3,248,738 + -2.8 3,248,802 - -2.8 3,248,841 - -0.3 3,248,929 - -1.6 3,249,019 + -2.8 3,249,034 + -0.6 3,249,061 + -1.0 3,249,062 - -2.4 3,249,062 - -1.0 3,249,062 - -1.9 3,249,062 - -1.3 3,249,062 - -2.1 3,249,062 - -2.1 3,249,069 - -3.3 3,249,074 + -1.0 3,249,074 + -0.7 3,249,382 - CA264_13920 0.18 -0.4 3,249,481 - CA264_13920 0.27 +0.2 3,249,481 - CA264_13920 0.27 +0.5 3,249,496 + CA264_13920 0.28 +0.5
Or see this region's nucleotide sequence