Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11970 and CA264_11975 are separated by 72 nucleotides CA264_11975 and CA264_11980 are separated by 102 nucleotides CA264_11980 and CA264_11985 are separated by 187 nucleotides
CA264_11970: CA264_11970 - hypothetical protein, at 2,781,794 to 2,782,222
_11970
CA264_11975: CA264_11975 - hypothetical protein, at 2,782,295 to 2,782,684
_11975
CA264_11980: CA264_11980 - DUF885 domain-containing protein, at 2,782,787 to 2,784,595
_11980
CA264_11985: CA264_11985 - dipeptidase E, at 2,784,783 to 2,785,502
_11985
Position (kb)
2782
2783
2784
2785 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2781.840 kb on - strand, within CA264_11970 at 2781.993 kb on - strand, within CA264_11970 at 2781.993 kb on - strand, within CA264_11970 at 2782.030 kb on - strand, within CA264_11970 at 2782.155 kb on + strand, within CA264_11970 at 2782.194 kb on - strand at 2782.199 kb on - strand at 2782.218 kb on - strand at 2782.220 kb on + strand at 2782.239 kb on - strand at 2782.246 kb on + strand at 2782.257 kb on + strand at 2782.285 kb on + strand at 2782.378 kb on + strand, within CA264_11975 at 2782.422 kb on - strand, within CA264_11975 at 2782.523 kb on - strand, within CA264_11975 at 2782.523 kb on - strand, within CA264_11975 at 2782.904 kb on + strand at 2782.937 kb on + strand at 2782.989 kb on + strand, within CA264_11980 at 2782.989 kb on + strand, within CA264_11980 at 2782.990 kb on - strand, within CA264_11980 at 2782.997 kb on + strand, within CA264_11980 at 2783.090 kb on + strand, within CA264_11980 at 2783.091 kb on - strand, within CA264_11980 at 2783.091 kb on - strand, within CA264_11980 at 2783.146 kb on - strand, within CA264_11980 at 2783.286 kb on + strand, within CA264_11980 at 2783.334 kb on - strand, within CA264_11980 at 2783.343 kb on + strand, within CA264_11980 at 2783.370 kb on + strand, within CA264_11980 at 2783.371 kb on - strand, within CA264_11980 at 2783.371 kb on - strand, within CA264_11980 at 2783.371 kb on - strand, within CA264_11980 at 2783.371 kb on - strand, within CA264_11980 at 2783.593 kb on - strand, within CA264_11980 at 2783.593 kb on - strand, within CA264_11980 at 2783.640 kb on - strand, within CA264_11980 at 2783.720 kb on - strand, within CA264_11980 at 2783.748 kb on + strand, within CA264_11980 at 2783.805 kb on + strand, within CA264_11980 at 2783.805 kb on + strand, within CA264_11980 at 2783.826 kb on + strand, within CA264_11980 at 2783.826 kb on + strand, within CA264_11980 at 2783.874 kb on + strand, within CA264_11980 at 2783.908 kb on + strand, within CA264_11980 at 2784.031 kb on + strand, within CA264_11980 at 2784.031 kb on + strand, within CA264_11980 at 2784.031 kb on + strand, within CA264_11980 at 2784.032 kb on - strand, within CA264_11980 at 2784.032 kb on - strand, within CA264_11980 at 2784.035 kb on + strand, within CA264_11980 at 2784.056 kb on + strand, within CA264_11980 at 2784.089 kb on + strand, within CA264_11980 at 2784.112 kb on - strand, within CA264_11980 at 2784.253 kb on + strand, within CA264_11980 at 2784.253 kb on + strand, within CA264_11980 at 2784.253 kb on + strand, within CA264_11980 at 2784.254 kb on - strand, within CA264_11980 at 2784.254 kb on - strand, within CA264_11980 at 2784.264 kb on + strand, within CA264_11980 at 2784.264 kb on + strand, within CA264_11980 at 2784.264 kb on + strand, within CA264_11980 at 2784.265 kb on - strand, within CA264_11980 at 2784.286 kb on + strand, within CA264_11980 at 2784.333 kb on + strand, within CA264_11980 at 2784.393 kb on + strand, within CA264_11980 at 2784.450 kb on + strand at 2784.451 kb on - strand at 2784.652 kb on + strand at 2784.652 kb on + strand at 2784.703 kb on + strand at 2784.703 kb on + strand at 2784.704 kb on - strand at 2784.704 kb on - strand at 2784.704 kb on - strand at 2784.710 kb on + strand at 2784.710 kb on + strand at 2784.746 kb on + strand at 2784.785 kb on - strand at 2784.788 kb on - strand at 2784.788 kb on - strand at 2784.788 kb on - strand at 2784.797 kb on + strand at 2784.819 kb on - strand at 2784.819 kb on - strand at 2784.911 kb on + strand, within CA264_11985 at 2784.912 kb on - strand, within CA264_11985 at 2785.147 kb on + strand, within CA264_11985 at 2785.148 kb on - strand, within CA264_11985 at 2785.194 kb on - strand, within CA264_11985 at 2785.227 kb on - strand, within CA264_11985 at 2785.227 kb on - strand, within CA264_11985 at 2785.348 kb on + strand, within CA264_11985 at 2785.389 kb on - strand, within CA264_11985 at 2785.425 kb on + strand, within CA264_11985 at 2785.486 kb on - strand at 2785.486 kb on - strand at 2785.488 kb on + strand at 2785.503 kb on - strand at 2785.585 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 2,781,840 - CA264_11970 0.11 +1.4 2,781,993 - CA264_11970 0.46 -0.5 2,781,993 - CA264_11970 0.46 -0.8 2,782,030 - CA264_11970 0.55 +0.7 2,782,155 + CA264_11970 0.84 +1.0 2,782,194 - +0.5 2,782,199 - +0.4 2,782,218 - +1.3 2,782,220 + -0.5 2,782,239 - +0.4 2,782,246 + +0.1 2,782,257 + -0.2 2,782,285 + +1.3 2,782,378 + CA264_11975 0.21 +0.5 2,782,422 - CA264_11975 0.33 +0.7 2,782,523 - CA264_11975 0.58 +1.6 2,782,523 - CA264_11975 0.58 +0.1 2,782,904 + +0.2 2,782,937 + -1.1 2,782,989 + CA264_11980 0.11 -0.5 2,782,989 + CA264_11980 0.11 +1.1 2,782,990 - CA264_11980 0.11 -0.4 2,782,997 + CA264_11980 0.12 +1.6 2,783,090 + CA264_11980 0.17 -0.5 2,783,091 - CA264_11980 0.17 +0.9 2,783,091 - CA264_11980 0.17 -0.0 2,783,146 - CA264_11980 0.20 +0.0 2,783,286 + CA264_11980 0.28 +0.5 2,783,334 - CA264_11980 0.30 +0.2 2,783,343 + CA264_11980 0.31 -0.1 2,783,370 + CA264_11980 0.32 -0.8 2,783,371 - CA264_11980 0.32 -1.3 2,783,371 - CA264_11980 0.32 +1.7 2,783,371 - CA264_11980 0.32 +0.6 2,783,371 - CA264_11980 0.32 +0.7 2,783,593 - CA264_11980 0.45 -0.2 2,783,593 - CA264_11980 0.45 +0.2 2,783,640 - CA264_11980 0.47 -0.4 2,783,720 - CA264_11980 0.52 +1.6 2,783,748 + CA264_11980 0.53 +0.1 2,783,805 + CA264_11980 0.56 -0.2 2,783,805 + CA264_11980 0.56 -0.3 2,783,826 + CA264_11980 0.57 -0.5 2,783,826 + CA264_11980 0.57 +1.0 2,783,874 + CA264_11980 0.60 -0.1 2,783,908 + CA264_11980 0.62 +0.6 2,784,031 + CA264_11980 0.69 +0.4 2,784,031 + CA264_11980 0.69 +0.0 2,784,031 + CA264_11980 0.69 +0.7 2,784,032 - CA264_11980 0.69 +1.0 2,784,032 - CA264_11980 0.69 -1.4 2,784,035 + CA264_11980 0.69 +0.2 2,784,056 + CA264_11980 0.70 +0.1 2,784,089 + CA264_11980 0.72 -0.1 2,784,112 - CA264_11980 0.73 -0.6 2,784,253 + CA264_11980 0.81 -1.0 2,784,253 + CA264_11980 0.81 +0.7 2,784,253 + CA264_11980 0.81 -0.0 2,784,254 - CA264_11980 0.81 -0.3 2,784,254 - CA264_11980 0.81 +0.3 2,784,264 + CA264_11980 0.82 +0.0 2,784,264 + CA264_11980 0.82 -1.0 2,784,264 + CA264_11980 0.82 +0.3 2,784,265 - CA264_11980 0.82 -0.2 2,784,286 + CA264_11980 0.83 +1.1 2,784,333 + CA264_11980 0.85 -0.5 2,784,393 + CA264_11980 0.89 -0.4 2,784,450 + +0.6 2,784,451 - -0.2 2,784,652 + +0.3 2,784,652 + +0.1 2,784,703 + +0.2 2,784,703 + -0.6 2,784,704 - +0.5 2,784,704 - -0.7 2,784,704 - +1.0 2,784,710 + -1.7 2,784,710 + -0.3 2,784,746 + +1.9 2,784,785 - -1.0 2,784,788 - -0.6 2,784,788 - +0.0 2,784,788 - -0.5 2,784,797 + -0.7 2,784,819 - +0.8 2,784,819 - -1.9 2,784,911 + CA264_11985 0.18 -0.4 2,784,912 - CA264_11985 0.18 +0.1 2,785,147 + CA264_11985 0.51 -0.1 2,785,148 - CA264_11985 0.51 +0.5 2,785,194 - CA264_11985 0.57 +0.5 2,785,227 - CA264_11985 0.62 -0.7 2,785,227 - CA264_11985 0.62 -0.8 2,785,348 + CA264_11985 0.78 +0.6 2,785,389 - CA264_11985 0.84 -0.5 2,785,425 + CA264_11985 0.89 +0.8 2,785,486 - +0.6 2,785,486 - +1.1 2,785,488 + +0.3 2,785,503 - +1.3 2,785,585 + +0.1
Or see this region's nucleotide sequence