Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09415 and CA264_09420 are separated by 501 nucleotides CA264_09420 and CA264_09425 are separated by 43 nucleotides
CA264_09415: CA264_09415 - hypothetical protein, at 2,200,359 to 2,201,153
_09415
CA264_09420: CA264_09420 - maltose acetyltransferase, at 2,201,655 to 2,202,212
_09420
CA264_09425: CA264_09425 - hypothetical protein, at 2,202,256 to 2,203,800
_09425
Position (kb)
2201
2202
2203 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2200.682 kb on - strand, within CA264_09415 at 2200.703 kb on + strand, within CA264_09415 at 2200.726 kb on - strand, within CA264_09415 at 2200.757 kb on + strand, within CA264_09415 at 2200.781 kb on + strand, within CA264_09415 at 2200.807 kb on + strand, within CA264_09415 at 2200.807 kb on + strand, within CA264_09415 at 2200.954 kb on - strand, within CA264_09415 at 2200.999 kb on + strand, within CA264_09415 at 2200.999 kb on + strand, within CA264_09415 at 2200.999 kb on + strand, within CA264_09415 at 2201.013 kb on + strand, within CA264_09415 at 2201.015 kb on + strand, within CA264_09415 at 2201.091 kb on + strand at 2201.091 kb on + strand at 2201.091 kb on + strand at 2201.092 kb on - strand at 2201.139 kb on - strand at 2201.174 kb on - strand at 2201.174 kb on - strand at 2201.179 kb on - strand at 2201.182 kb on + strand at 2201.183 kb on - strand at 2201.183 kb on - strand at 2201.185 kb on - strand at 2201.185 kb on - strand at 2201.258 kb on + strand at 2201.282 kb on + strand at 2201.338 kb on + strand at 2201.341 kb on - strand at 2201.419 kb on + strand at 2201.419 kb on + strand at 2201.420 kb on - strand at 2201.549 kb on + strand at 2201.576 kb on - strand at 2201.616 kb on - strand at 2201.643 kb on + strand at 2201.649 kb on + strand at 2201.693 kb on - strand at 2201.695 kb on - strand at 2201.695 kb on - strand at 2201.695 kb on - strand at 2201.695 kb on - strand at 2201.750 kb on - strand, within CA264_09420 at 2201.800 kb on + strand, within CA264_09420 at 2201.812 kb on + strand, within CA264_09420 at 2201.812 kb on + strand, within CA264_09420 at 2201.813 kb on - strand, within CA264_09420 at 2201.842 kb on + strand, within CA264_09420 at 2201.857 kb on - strand, within CA264_09420 at 2201.857 kb on - strand, within CA264_09420 at 2201.865 kb on + strand, within CA264_09420 at 2201.909 kb on + strand, within CA264_09420 at 2201.982 kb on + strand, within CA264_09420 at 2201.982 kb on + strand, within CA264_09420 at 2202.083 kb on - strand, within CA264_09420 at 2202.100 kb on + strand, within CA264_09420 at 2202.125 kb on - strand, within CA264_09420 at 2202.210 kb on + strand at 2202.257 kb on + strand at 2202.257 kb on + strand at 2202.257 kb on + strand at 2202.257 kb on + strand at 2202.258 kb on - strand at 2202.258 kb on - strand at 2202.258 kb on - strand at 2202.311 kb on - strand at 2202.311 kb on - strand at 2202.311 kb on - strand at 2202.316 kb on - strand at 2202.316 kb on - strand at 2202.381 kb on + strand at 2202.472 kb on + strand, within CA264_09425 at 2202.532 kb on + strand, within CA264_09425 at 2202.545 kb on + strand, within CA264_09425 at 2202.563 kb on + strand, within CA264_09425 at 2202.563 kb on + strand, within CA264_09425 at 2202.651 kb on - strand, within CA264_09425 at 2202.654 kb on + strand, within CA264_09425 at 2202.655 kb on - strand, within CA264_09425 at 2202.686 kb on + strand, within CA264_09425 at 2202.688 kb on + strand, within CA264_09425 at 2202.688 kb on + strand, within CA264_09425 at 2202.688 kb on + strand, within CA264_09425 at 2202.754 kb on + strand, within CA264_09425 at 2202.754 kb on + strand, within CA264_09425 at 2202.754 kb on + strand, within CA264_09425 at 2202.837 kb on - strand, within CA264_09425 at 2202.837 kb on - strand, within CA264_09425 at 2202.842 kb on + strand, within CA264_09425 at 2202.867 kb on + strand, within CA264_09425 at 2202.941 kb on + strand, within CA264_09425 at 2202.942 kb on - strand, within CA264_09425 at 2202.952 kb on - strand, within CA264_09425 at 2202.972 kb on + strand, within CA264_09425 at 2202.990 kb on - strand, within CA264_09425 at 2203.030 kb on - strand, within CA264_09425 at 2203.072 kb on - strand, within CA264_09425 at 2203.089 kb on - strand, within CA264_09425 at 2203.089 kb on - strand, within CA264_09425 at 2203.089 kb on - strand, within CA264_09425 at 2203.092 kb on - strand, within CA264_09425 at 2203.092 kb on - strand, within CA264_09425 at 2203.119 kb on - strand, within CA264_09425 at 2203.154 kb on - strand, within CA264_09425
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 2,200,682 - CA264_09415 0.41 +0.9 2,200,703 + CA264_09415 0.43 -0.0 2,200,726 - CA264_09415 0.46 -0.5 2,200,757 + CA264_09415 0.50 -0.4 2,200,781 + CA264_09415 0.53 +1.0 2,200,807 + CA264_09415 0.56 +1.9 2,200,807 + CA264_09415 0.56 +0.3 2,200,954 - CA264_09415 0.75 -1.3 2,200,999 + CA264_09415 0.81 -0.3 2,200,999 + CA264_09415 0.81 +0.4 2,200,999 + CA264_09415 0.81 +0.5 2,201,013 + CA264_09415 0.82 -1.0 2,201,015 + CA264_09415 0.83 -0.6 2,201,091 + -0.1 2,201,091 + +0.2 2,201,091 + +0.8 2,201,092 - +0.9 2,201,139 - +0.4 2,201,174 - -0.5 2,201,174 - -0.1 2,201,179 - -0.1 2,201,182 + +0.0 2,201,183 - +0.2 2,201,183 - -0.5 2,201,185 - -0.4 2,201,185 - -0.4 2,201,258 + -0.5 2,201,282 + -0.6 2,201,338 + -0.6 2,201,341 - -0.4 2,201,419 + -0.5 2,201,419 + -0.3 2,201,420 - +0.1 2,201,549 + -1.3 2,201,576 - -1.0 2,201,616 - -1.1 2,201,643 + -1.1 2,201,649 + +0.3 2,201,693 - +0.4 2,201,695 - +0.1 2,201,695 - -0.5 2,201,695 - -0.0 2,201,695 - -0.2 2,201,750 - CA264_09420 0.17 +0.3 2,201,800 + CA264_09420 0.26 -0.4 2,201,812 + CA264_09420 0.28 -0.4 2,201,812 + CA264_09420 0.28 +0.0 2,201,813 - CA264_09420 0.28 +0.1 2,201,842 + CA264_09420 0.34 -0.8 2,201,857 - CA264_09420 0.36 -1.0 2,201,857 - CA264_09420 0.36 +0.9 2,201,865 + CA264_09420 0.38 -0.5 2,201,909 + CA264_09420 0.46 +0.8 2,201,982 + CA264_09420 0.59 +0.4 2,201,982 + CA264_09420 0.59 -0.7 2,202,083 - CA264_09420 0.77 -0.3 2,202,100 + CA264_09420 0.80 +0.7 2,202,125 - CA264_09420 0.84 +1.0 2,202,210 + -0.5 2,202,257 + +0.8 2,202,257 + +0.1 2,202,257 + -0.0 2,202,257 + -0.2 2,202,258 - -0.9 2,202,258 - +0.9 2,202,258 - -0.0 2,202,311 - -0.2 2,202,311 - -0.4 2,202,311 - +1.7 2,202,316 - -0.7 2,202,316 - -0.3 2,202,381 + -1.8 2,202,472 + CA264_09425 0.14 -0.1 2,202,532 + CA264_09425 0.18 -0.4 2,202,545 + CA264_09425 0.19 -0.4 2,202,563 + CA264_09425 0.20 +0.1 2,202,563 + CA264_09425 0.20 -0.7 2,202,651 - CA264_09425 0.26 -0.2 2,202,654 + CA264_09425 0.26 -0.2 2,202,655 - CA264_09425 0.26 +0.6 2,202,686 + CA264_09425 0.28 +0.2 2,202,688 + CA264_09425 0.28 -0.6 2,202,688 + CA264_09425 0.28 +0.6 2,202,688 + CA264_09425 0.28 -0.4 2,202,754 + CA264_09425 0.32 -1.0 2,202,754 + CA264_09425 0.32 -0.5 2,202,754 + CA264_09425 0.32 +0.3 2,202,837 - CA264_09425 0.38 +0.0 2,202,837 - CA264_09425 0.38 -0.3 2,202,842 + CA264_09425 0.38 -0.0 2,202,867 + CA264_09425 0.40 -0.2 2,202,941 + CA264_09425 0.44 -0.2 2,202,942 - CA264_09425 0.44 +0.7 2,202,952 - CA264_09425 0.45 -0.3 2,202,972 + CA264_09425 0.46 +0.0 2,202,990 - CA264_09425 0.48 -0.1 2,203,030 - CA264_09425 0.50 +0.3 2,203,072 - CA264_09425 0.53 -1.1 2,203,089 - CA264_09425 0.54 -0.7 2,203,089 - CA264_09425 0.54 -0.5 2,203,089 - CA264_09425 0.54 -0.0 2,203,092 - CA264_09425 0.54 -0.3 2,203,092 - CA264_09425 0.54 -0.5 2,203,119 - CA264_09425 0.56 +0.2 2,203,154 - CA264_09425 0.58 -0.3
Or see this region's nucleotide sequence