Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05340

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05335 and CA264_05340 are separated by 72 nucleotidesCA264_05340 and CA264_05345 are separated by 38 nucleotides CA264_05335: CA264_05335 - Nif3-like dinuclear metal center hexameric protein, at 1,236,704 to 1,237,804 _05335 CA264_05340: CA264_05340 - tetraacyldisaccharide 4'-kinase, at 1,237,877 to 1,238,929 _05340 CA264_05345: CA264_05345 - hypothetical protein, at 1,238,968 to 1,240,893 _05345 Position (kb) 1237 1238 1239Strain fitness (log2 ratio) -2 -1 0 1 2at 1236.879 kb on - strand, within CA264_05335at 1236.879 kb on - strand, within CA264_05335at 1236.879 kb on - strand, within CA264_05335at 1236.879 kb on - strand, within CA264_05335at 1236.881 kb on - strand, within CA264_05335at 1236.927 kb on - strand, within CA264_05335at 1236.993 kb on + strand, within CA264_05335at 1237.110 kb on - strand, within CA264_05335at 1237.117 kb on - strand, within CA264_05335at 1237.123 kb on - strand, within CA264_05335at 1237.220 kb on + strand, within CA264_05335at 1237.276 kb on + strand, within CA264_05335at 1237.425 kb on - strand, within CA264_05335at 1237.463 kb on + strand, within CA264_05335at 1237.464 kb on - strand, within CA264_05335at 1237.501 kb on + strand, within CA264_05335at 1237.502 kb on - strand, within CA264_05335at 1237.515 kb on + strand, within CA264_05335at 1237.516 kb on - strand, within CA264_05335at 1237.550 kb on - strand, within CA264_05335at 1237.563 kb on + strand, within CA264_05335at 1237.564 kb on - strand, within CA264_05335at 1237.680 kb on - strand, within CA264_05335at 1237.785 kb on - strandat 1237.793 kb on + strandat 1237.824 kb on - strandat 1237.824 kb on - strandat 1237.829 kb on + strandat 1237.835 kb on - strandat 1238.925 kb on + strandat 1238.927 kb on + strandat 1238.982 kb on - strandat 1238.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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1,236,879 - CA264_05335 0.16 -0.5
1,236,879 - CA264_05335 0.16 +0.1
1,236,879 - CA264_05335 0.16 -0.2
1,236,879 - CA264_05335 0.16 -0.7
1,236,881 - CA264_05335 0.16 +1.8
1,236,927 - CA264_05335 0.20 -1.5
1,236,993 + CA264_05335 0.26 +0.3
1,237,110 - CA264_05335 0.37 +0.1
1,237,117 - CA264_05335 0.38 -0.2
1,237,123 - CA264_05335 0.38 -0.2
1,237,220 + CA264_05335 0.47 -0.4
1,237,276 + CA264_05335 0.52 +0.3
1,237,425 - CA264_05335 0.65 +1.4
1,237,463 + CA264_05335 0.69 -2.1
1,237,464 - CA264_05335 0.69 +0.1
1,237,501 + CA264_05335 0.72 +0.8
1,237,502 - CA264_05335 0.72 +1.1
1,237,515 + CA264_05335 0.74 -0.4
1,237,516 - CA264_05335 0.74 +0.2
1,237,550 - CA264_05335 0.77 -0.2
1,237,563 + CA264_05335 0.78 +1.6
1,237,564 - CA264_05335 0.78 +0.4
1,237,680 - CA264_05335 0.89 -0.0
1,237,785 - -0.9
1,237,793 + +0.7
1,237,824 - -0.0
1,237,824 - -0.3
1,237,829 + -0.3
1,237,835 - -0.5
1,238,925 + -0.1
1,238,927 + +1.9
1,238,982 - -1.5
1,238,994 - -0.2

Or see this region's nucleotide sequence