Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04250 and CA264_04255 are separated by 16 nucleotides CA264_04255 and CA264_04260 are separated by 238 nucleotides CA264_04260 and CA264_04265 are separated by 274 nucleotides CA264_04265 and CA264_04270 are separated by 53 nucleotides
CA264_04250: CA264_04250 - NADH oxidoreductase (quinone) subunit F, at 982,438 to 983,739
_04250
CA264_04255: CA264_04255 - NADH-quinone oxidoreductase subunit E, at 983,756 to 984,220
_04255
CA264_04260: CA264_04260 - NADH-quinone oxidoreductase subunit C/D, at 984,459 to 986,207
_04260
CA264_04265: CA264_04265 - NADH-quinone oxidoreductase subunit B, at 986,482 to 987,120
_04265
CA264_04270: CA264_04270 - NADH:ubiquinone oxidoreductase subunit A, at 987,174 to 987,605
_04270
Position (kb) 984
985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2 at 983.614 kb on + strand at 983.632 kb on - strand at 983.668 kb on + strand at 983.669 kb on - strand at 983.761 kb on + strand at 983.762 kb on - strand at 983.763 kb on + strand at 983.763 kb on + strand at 983.808 kb on + strand, within CA264_04255 at 983.913 kb on - strand, within CA264_04255 at 983.913 kb on - strand, within CA264_04255 at 983.928 kb on + strand, within CA264_04255 at 983.928 kb on + strand, within CA264_04255 at 983.929 kb on - strand, within CA264_04255 at 983.929 kb on - strand, within CA264_04255 at 983.984 kb on + strand, within CA264_04255 at 983.985 kb on - strand, within CA264_04255 at 983.985 kb on - strand, within CA264_04255 at 984.030 kb on + strand, within CA264_04255 at 984.068 kb on - strand, within CA264_04255 at 984.068 kb on - strand, within CA264_04255 at 984.146 kb on + strand, within CA264_04255 at 984.147 kb on - strand, within CA264_04255 at 984.179 kb on + strand at 984.180 kb on - strand at 984.236 kb on - strand at 984.246 kb on + strand at 984.262 kb on + strand at 984.336 kb on - strand at 984.355 kb on + strand at 984.357 kb on + strand at 984.357 kb on + strand at 984.358 kb on - strand at 984.358 kb on - strand at 984.376 kb on + strand at 984.376 kb on + strand at 984.427 kb on + strand at 984.428 kb on - strand at 984.431 kb on - strand at 984.450 kb on + strand at 984.450 kb on + strand at 984.501 kb on + strand at 984.502 kb on - strand at 984.502 kb on - strand at 984.504 kb on - strand at 984.537 kb on + strand at 984.538 kb on - strand at 984.541 kb on + strand at 984.542 kb on - strand at 984.623 kb on - strand at 984.625 kb on + strand at 984.626 kb on - strand at 984.784 kb on + strand, within CA264_04260 at 984.820 kb on - strand, within CA264_04260 at 984.822 kb on + strand, within CA264_04260 at 984.823 kb on - strand, within CA264_04260 at 984.823 kb on - strand, within CA264_04260 at 984.823 kb on - strand, within CA264_04260 at 984.824 kb on + strand, within CA264_04260 at 984.825 kb on - strand, within CA264_04260 at 984.825 kb on - strand, within CA264_04260 at 984.825 kb on - strand, within CA264_04260 at 984.856 kb on - strand, within CA264_04260 at 985.102 kb on + strand, within CA264_04260 at 985.247 kb on - strand, within CA264_04260 at 985.410 kb on - strand, within CA264_04260 at 985.456 kb on + strand, within CA264_04260 at 985.456 kb on + strand, within CA264_04260 at 985.456 kb on + strand, within CA264_04260 at 985.457 kb on - strand, within CA264_04260 at 985.457 kb on - strand, within CA264_04260 at 985.513 kb on - strand, within CA264_04260 at 985.534 kb on - strand, within CA264_04260 at 985.534 kb on - strand, within CA264_04260 at 985.662 kb on - strand, within CA264_04260 at 985.792 kb on + strand, within CA264_04260 at 985.834 kb on + strand, within CA264_04260 at 985.835 kb on - strand, within CA264_04260 at 985.850 kb on - strand, within CA264_04260 at 985.960 kb on + strand, within CA264_04260 at 985.961 kb on - strand, within CA264_04260 at 985.961 kb on - strand, within CA264_04260 at 985.961 kb on - strand, within CA264_04260 at 985.961 kb on - strand, within CA264_04260 at 985.961 kb on - strand, within CA264_04260 at 985.965 kb on - strand, within CA264_04260 at 985.970 kb on + strand, within CA264_04260 at 985.971 kb on - strand, within CA264_04260 at 985.971 kb on - strand, within CA264_04260 at 986.035 kb on + strand at 986.232 kb on - strand at 986.234 kb on + strand at 986.234 kb on + strand at 986.234 kb on + strand at 986.235 kb on - strand at 986.235 kb on - strand at 986.235 kb on - strand at 986.235 kb on - strand at 986.239 kb on + strand at 986.240 kb on - strand at 986.240 kb on - strand at 986.348 kb on + strand at 986.349 kb on - strand at 986.387 kb on + strand at 986.388 kb on - strand at 986.388 kb on - strand at 986.389 kb on + strand at 986.389 kb on + strand at 986.390 kb on - strand at 986.393 kb on + strand at 986.394 kb on - strand at 986.461 kb on + strand at 986.462 kb on - strand at 986.463 kb on + strand at 986.463 kb on + strand at 986.464 kb on - strand at 986.464 kb on - strand at 986.464 kb on - strand at 986.471 kb on + strand at 986.472 kb on - strand at 986.483 kb on + strand at 986.483 kb on + strand at 986.483 kb on + strand at 986.484 kb on - strand at 986.484 kb on - strand at 986.484 kb on - strand at 986.484 kb on - strand at 986.684 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.734 kb on - strand, within CA264_04265 at 986.832 kb on + strand, within CA264_04265 at 986.887 kb on + strand, within CA264_04265 at 986.919 kb on - strand, within CA264_04265 at 987.059 kb on + strand at 987.135 kb on - strand at 987.146 kb on - strand at 987.164 kb on - strand at 987.164 kb on - strand at 987.164 kb on - strand at 987.166 kb on - strand at 987.166 kb on - strand at 987.168 kb on + strand at 987.168 kb on + strand at 987.169 kb on - strand at 987.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 983,614 + -1.2 983,632 - +0.6 983,668 + +0.8 983,669 - -0.1 983,761 + -0.2 983,762 - +0.6 983,763 + -0.1 983,763 + -0.5 983,808 + CA264_04255 0.11 +0.5 983,913 - CA264_04255 0.34 -0.3 983,913 - CA264_04255 0.34 -0.6 983,928 + CA264_04255 0.37 -0.1 983,928 + CA264_04255 0.37 -0.6 983,929 - CA264_04255 0.37 +1.2 983,929 - CA264_04255 0.37 -0.1 983,984 + CA264_04255 0.49 -0.5 983,985 - CA264_04255 0.49 -0.1 983,985 - CA264_04255 0.49 +0.1 984,030 + CA264_04255 0.59 -0.5 984,068 - CA264_04255 0.67 +1.1 984,068 - CA264_04255 0.67 -0.6 984,146 + CA264_04255 0.84 -0.7 984,147 - CA264_04255 0.84 -1.8 984,179 + +0.6 984,180 - -0.2 984,236 - -1.0 984,246 + +1.5 984,262 + +0.1 984,336 - -0.2 984,355 + +0.2 984,357 + -0.1 984,357 + +0.2 984,358 - +0.1 984,358 - -0.6 984,376 + -0.1 984,376 + -0.2 984,427 + +0.4 984,428 - -0.3 984,431 - -0.2 984,450 + -0.5 984,450 + -0.4 984,501 + -0.9 984,502 - +2.0 984,502 - -0.5 984,504 - +0.3 984,537 + -0.3 984,538 - -0.1 984,541 + -0.2 984,542 - +0.8 984,623 - +0.6 984,625 + +0.8 984,626 - +1.2 984,784 + CA264_04260 0.19 +0.7 984,820 - CA264_04260 0.21 -0.0 984,822 + CA264_04260 0.21 -0.2 984,823 - CA264_04260 0.21 -1.4 984,823 - CA264_04260 0.21 +0.2 984,823 - CA264_04260 0.21 -0.4 984,824 + CA264_04260 0.21 +0.1 984,825 - CA264_04260 0.21 +0.4 984,825 - CA264_04260 0.21 -1.2 984,825 - CA264_04260 0.21 -0.1 984,856 - CA264_04260 0.23 +0.7 985,102 + CA264_04260 0.37 +0.3 985,247 - CA264_04260 0.45 +0.5 985,410 - CA264_04260 0.54 +0.6 985,456 + CA264_04260 0.57 +0.9 985,456 + CA264_04260 0.57 +0.9 985,456 + CA264_04260 0.57 -0.0 985,457 - CA264_04260 0.57 +0.4 985,457 - CA264_04260 0.57 -0.7 985,513 - CA264_04260 0.60 +0.5 985,534 - CA264_04260 0.61 +0.3 985,534 - CA264_04260 0.61 +0.0 985,662 - CA264_04260 0.69 -0.3 985,792 + CA264_04260 0.76 -0.6 985,834 + CA264_04260 0.79 +0.7 985,835 - CA264_04260 0.79 -0.4 985,850 - CA264_04260 0.80 +0.7 985,960 + CA264_04260 0.86 -0.1 985,961 - CA264_04260 0.86 +0.1 985,961 - CA264_04260 0.86 +0.2 985,961 - CA264_04260 0.86 -0.1 985,961 - CA264_04260 0.86 -0.1 985,961 - CA264_04260 0.86 -0.7 985,965 - CA264_04260 0.86 +1.0 985,970 + CA264_04260 0.86 +0.7 985,971 - CA264_04260 0.86 +0.2 985,971 - CA264_04260 0.86 +0.5 986,035 + +0.5 986,232 - +1.0 986,234 + +1.1 986,234 + +1.9 986,234 + -0.1 986,235 - -0.3 986,235 - -0.1 986,235 - -0.4 986,235 - +0.4 986,239 + -0.5 986,240 - +0.2 986,240 - -0.2 986,348 + -2.0 986,349 - -0.4 986,387 + -0.5 986,388 - +0.5 986,388 - -0.1 986,389 + -0.1 986,389 + +0.8 986,390 - +0.5 986,393 + -0.5 986,394 - -0.1 986,461 + +0.9 986,462 - +0.0 986,463 + -0.6 986,463 + +0.1 986,464 - -0.5 986,464 - -0.5 986,464 - +0.5 986,471 + +0.8 986,472 - -0.0 986,483 + -1.1 986,483 + -0.2 986,483 + -0.3 986,484 - -1.5 986,484 - -0.1 986,484 - -2.1 986,484 - -0.7 986,684 + CA264_04265 0.32 +1.7 986,729 + CA264_04265 0.39 +0.0 986,729 + CA264_04265 0.39 -0.6 986,729 + CA264_04265 0.39 +1.9 986,729 + CA264_04265 0.39 -1.6 986,729 + CA264_04265 0.39 +0.1 986,729 + CA264_04265 0.39 +0.1 986,730 - CA264_04265 0.39 -0.1 986,730 - CA264_04265 0.39 +0.0 986,730 - CA264_04265 0.39 +0.4 986,730 - CA264_04265 0.39 -0.3 986,730 - CA264_04265 0.39 +0.3 986,734 - CA264_04265 0.39 +0.0 986,832 + CA264_04265 0.55 -0.9 986,887 + CA264_04265 0.63 +0.6 986,919 - CA264_04265 0.68 -0.3 987,059 + +0.2 987,135 - -0.0 987,146 - -0.1 987,164 - +0.3 987,164 - +0.1 987,164 - +0.1 987,166 - -0.1 987,166 - -0.1 987,168 + +0.9 987,168 + +0.3 987,169 - -0.1 987,206 - -0.1
Or see this region's nucleotide sequence