Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03625

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03620 and CA264_03625 are separated by 136 nucleotidesCA264_03625 and CA264_03630 are separated by 387 nucleotides CA264_03620: CA264_03620 - acyl-CoA desaturase, at 843,342 to 844,457 _03620 CA264_03625: CA264_03625 - proline iminopeptidase, at 844,594 to 845,655 _03625 CA264_03630: CA264_03630 - PAS domain-containing sensor histidine kinase, at 846,043 to 848,001 _03630 Position (kb) 844 845 846Strain fitness (log2 ratio) -1 0 1 2 3 4at 843.656 kb on + strand, within CA264_03620at 843.657 kb on - strand, within CA264_03620at 843.710 kb on + strand, within CA264_03620at 843.710 kb on + strand, within CA264_03620at 843.718 kb on + strand, within CA264_03620at 843.719 kb on - strand, within CA264_03620at 843.726 kb on - strand, within CA264_03620at 843.729 kb on + strand, within CA264_03620at 843.729 kb on + strand, within CA264_03620at 843.730 kb on - strand, within CA264_03620at 843.849 kb on + strand, within CA264_03620at 843.939 kb on - strand, within CA264_03620at 843.973 kb on + strand, within CA264_03620at 843.981 kb on + strand, within CA264_03620at 843.981 kb on + strand, within CA264_03620at 843.993 kb on - strand, within CA264_03620at 844.015 kb on + strand, within CA264_03620at 844.015 kb on + strand, within CA264_03620at 844.016 kb on - strand, within CA264_03620at 844.276 kb on + strand, within CA264_03620at 844.276 kb on + strand, within CA264_03620at 844.290 kb on + strand, within CA264_03620at 844.344 kb on + strand, within CA264_03620at 844.344 kb on + strand, within CA264_03620at 844.345 kb on - strand, within CA264_03620at 844.345 kb on - strand, within CA264_03620at 844.440 kb on - strandat 844.440 kb on - strandat 844.440 kb on - strandat 844.451 kb on - strandat 844.455 kb on + strandat 844.455 kb on + strandat 844.560 kb on + strandat 844.653 kb on - strandat 844.670 kb on + strandat 844.670 kb on + strandat 844.670 kb on + strandat 844.706 kb on + strand, within CA264_03625at 844.803 kb on + strand, within CA264_03625at 844.804 kb on - strand, within CA264_03625at 844.886 kb on + strand, within CA264_03625at 844.886 kb on + strand, within CA264_03625at 844.886 kb on + strand, within CA264_03625at 844.886 kb on + strand, within CA264_03625at 844.886 kb on + strand, within CA264_03625at 844.886 kb on + strand, within CA264_03625at 844.887 kb on - strand, within CA264_03625at 844.887 kb on - strand, within CA264_03625at 844.887 kb on - strand, within CA264_03625at 844.887 kb on - strand, within CA264_03625at 844.887 kb on - strand, within CA264_03625at 844.887 kb on - strand, within CA264_03625at 844.914 kb on + strand, within CA264_03625at 844.997 kb on + strand, within CA264_03625at 844.998 kb on - strand, within CA264_03625at 844.998 kb on - strand, within CA264_03625at 845.009 kb on + strand, within CA264_03625at 845.029 kb on + strand, within CA264_03625at 845.099 kb on + strand, within CA264_03625at 845.161 kb on + strand, within CA264_03625at 845.162 kb on - strand, within CA264_03625at 845.168 kb on + strand, within CA264_03625at 845.182 kb on + strand, within CA264_03625at 845.313 kb on - strand, within CA264_03625at 845.333 kb on + strand, within CA264_03625at 845.334 kb on - strand, within CA264_03625at 845.340 kb on - strand, within CA264_03625at 845.340 kb on - strand, within CA264_03625at 845.340 kb on - strand, within CA264_03625at 845.342 kb on + strand, within CA264_03625at 845.343 kb on - strand, within CA264_03625at 845.366 kb on + strand, within CA264_03625at 845.417 kb on - strand, within CA264_03625at 845.437 kb on - strand, within CA264_03625at 845.633 kb on - strandat 845.647 kb on + strandat 845.647 kb on + strandat 845.692 kb on - strandat 845.695 kb on + strandat 845.696 kb on - strandat 845.699 kb on + strandat 845.702 kb on - strandat 845.728 kb on + strandat 845.846 kb on - strandat 845.846 kb on - strandat 845.846 kb on - strandat 845.846 kb on - strandat 845.846 kb on - strandat 845.863 kb on + strandat 845.940 kb on - strandat 845.959 kb on - strandat 845.959 kb on - strandat 845.978 kb on + strandat 845.982 kb on + strandat 845.983 kb on - strandat 845.992 kb on - strandat 846.028 kb on - strandat 846.042 kb on + strandat 846.043 kb on - strandat 846.051 kb on - strandat 846.073 kb on + strandat 846.114 kb on - strandat 846.114 kb on - strandat 846.133 kb on + strandat 846.134 kb on - strandat 846.138 kb on + strandat 846.247 kb on + strand, within CA264_03630at 846.247 kb on + strand, within CA264_03630at 846.247 kb on + strand, within CA264_03630at 846.247 kb on + strand, within CA264_03630at 846.248 kb on - strand, within CA264_03630at 846.248 kb on - strand, within CA264_03630at 846.388 kb on + strand, within CA264_03630at 846.388 kb on + strand, within CA264_03630at 846.389 kb on - strand, within CA264_03630at 846.429 kb on - strand, within CA264_03630at 846.538 kb on + strand, within CA264_03630at 846.538 kb on + strand, within CA264_03630at 846.538 kb on + strand, within CA264_03630at 846.543 kb on + strand, within CA264_03630at 846.544 kb on - strand, within CA264_03630at 846.549 kb on + strand, within CA264_03630at 846.550 kb on - strand, within CA264_03630at 846.637 kb on + strand, within CA264_03630at 846.638 kb on - strand, within CA264_03630at 846.653 kb on - strand, within CA264_03630at 846.655 kb on - strand, within CA264_03630

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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843,656 + CA264_03620 0.28 +0.2
843,657 - CA264_03620 0.28 +0.7
843,710 + CA264_03620 0.33 +0.2
843,710 + CA264_03620 0.33 -0.5
843,718 + CA264_03620 0.34 +0.7
843,719 - CA264_03620 0.34 -1.1
843,726 - CA264_03620 0.34 +0.5
843,729 + CA264_03620 0.35 +0.6
843,729 + CA264_03620 0.35 -0.5
843,730 - CA264_03620 0.35 +0.0
843,849 + CA264_03620 0.45 -0.7
843,939 - CA264_03620 0.53 +0.9
843,973 + CA264_03620 0.57 -0.3
843,981 + CA264_03620 0.57 -0.1
843,981 + CA264_03620 0.57 +0.6
843,993 - CA264_03620 0.58 +0.5
844,015 + CA264_03620 0.60 -0.1
844,015 + CA264_03620 0.60 +1.5
844,016 - CA264_03620 0.60 +0.5
844,276 + CA264_03620 0.84 +0.0
844,276 + CA264_03620 0.84 +0.2
844,290 + CA264_03620 0.85 +0.5
844,344 + CA264_03620 0.90 +0.9
844,344 + CA264_03620 0.90 +1.3
844,345 - CA264_03620 0.90 +0.1
844,345 - CA264_03620 0.90 -0.8
844,440 - -1.2
844,440 - +0.8
844,440 - -0.2
844,451 - -0.0
844,455 + -0.2
844,455 + -0.0
844,560 + +1.2
844,653 - +2.3
844,670 + +2.1
844,670 + +1.4
844,670 + +0.9
844,706 + CA264_03625 0.11 +2.4
844,803 + CA264_03625 0.20 +2.0
844,804 - CA264_03625 0.20 -0.4
844,886 + CA264_03625 0.27 +2.5
844,886 + CA264_03625 0.27 +2.6
844,886 + CA264_03625 0.27 +2.6
844,886 + CA264_03625 0.27 +2.2
844,886 + CA264_03625 0.27 +1.8
844,886 + CA264_03625 0.27 +3.9
844,887 - CA264_03625 0.28 +1.2
844,887 - CA264_03625 0.28 +0.7
844,887 - CA264_03625 0.28 +1.0
844,887 - CA264_03625 0.28 +1.0
844,887 - CA264_03625 0.28 +1.2
844,887 - CA264_03625 0.28 +0.2
844,914 + CA264_03625 0.30 +2.4
844,997 + CA264_03625 0.38 +2.1
844,998 - CA264_03625 0.38 +0.8
844,998 - CA264_03625 0.38 -0.6
845,009 + CA264_03625 0.39 +2.1
845,029 + CA264_03625 0.41 +2.4
845,099 + CA264_03625 0.48 +1.6
845,161 + CA264_03625 0.53 +2.8
845,162 - CA264_03625 0.53 +1.2
845,168 + CA264_03625 0.54 +3.4
845,182 + CA264_03625 0.55 -0.1
845,313 - CA264_03625 0.68 -0.5
845,333 + CA264_03625 0.70 +2.1
845,334 - CA264_03625 0.70 +1.5
845,340 - CA264_03625 0.70 +0.9
845,340 - CA264_03625 0.70 +0.9
845,340 - CA264_03625 0.70 +0.7
845,342 + CA264_03625 0.70 +2.6
845,343 - CA264_03625 0.71 +0.8
845,366 + CA264_03625 0.73 +2.3
845,417 - CA264_03625 0.77 +0.4
845,437 - CA264_03625 0.79 +1.6
845,633 - +0.9
845,647 + +2.9
845,647 + +2.9
845,692 - +0.8
845,695 + +3.0
845,696 - -0.1
845,699 + +2.3
845,702 - +0.2
845,728 + +2.4
845,846 - +1.1
845,846 - +0.4
845,846 - +0.8
845,846 - +0.9
845,846 - +0.9
845,863 + +2.5
845,940 - +1.2
845,959 - +1.1
845,959 - +2.9
845,978 + +2.5
845,982 + +3.1
845,983 - +1.1
845,992 - +0.1
846,028 - +1.5
846,042 + +2.5
846,043 - -0.2
846,051 - +2.2
846,073 + +2.3
846,114 - +1.8
846,114 - +0.7
846,133 + +3.2
846,134 - +0.5
846,138 + +2.6
846,247 + CA264_03630 0.10 +3.0
846,247 + CA264_03630 0.10 +3.0
846,247 + CA264_03630 0.10 +2.1
846,247 + CA264_03630 0.10 +3.2
846,248 - CA264_03630 0.10 +0.6
846,248 - CA264_03630 0.10 +0.9
846,388 + CA264_03630 0.18 +3.1
846,388 + CA264_03630 0.18 +3.0
846,389 - CA264_03630 0.18 +1.3
846,429 - CA264_03630 0.20 +1.8
846,538 + CA264_03630 0.25 +2.7
846,538 + CA264_03630 0.25 +2.8
846,538 + CA264_03630 0.25 +4.1
846,543 + CA264_03630 0.26 +3.4
846,544 - CA264_03630 0.26 +0.8
846,549 + CA264_03630 0.26 +3.5
846,550 - CA264_03630 0.26 +1.0
846,637 + CA264_03630 0.30 +3.6
846,638 - CA264_03630 0.30 +0.5
846,653 - CA264_03630 0.31 +1.3
846,655 - CA264_03630 0.31 +0.8

Or see this region's nucleotide sequence