Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03195

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03185 and CA264_03190 are separated by 117 nucleotidesCA264_03190 and CA264_03195 are separated by 268 nucleotidesCA264_03195 and CA264_03200 are separated by 146 nucleotides CA264_03185: CA264_03185 - hypothetical protein, at 745,594 to 746,904 _03185 CA264_03190: CA264_03190 - hypothetical protein, at 747,022 to 747,483 _03190 CA264_03195: CA264_03195 - alpha-glucan family phosphorylase, at 747,752 to 749,407 _03195 CA264_03200: CA264_03200 - aminoacyl-histidine dipeptidase, at 749,554 to 751,017 _03200 Position (kb) 747 748 749 750Strain fitness (log2 ratio) -2 -1 0 1 2 3at 746.792 kb on + strandat 746.793 kb on - strandat 746.950 kb on - strandat 746.952 kb on - strandat 747.380 kb on + strand, within CA264_03190at 747.380 kb on + strand, within CA264_03190at 747.380 kb on + strand, within CA264_03190at 747.380 kb on + strand, within CA264_03190at 747.393 kb on + strand, within CA264_03190at 747.484 kb on - strandat 747.490 kb on + strandat 747.490 kb on + strandat 747.491 kb on - strandat 747.491 kb on - strandat 747.507 kb on - strandat 747.575 kb on + strandat 747.652 kb on + strandat 747.652 kb on + strandat 747.662 kb on - strandat 747.672 kb on - strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.682 kb on + strandat 747.683 kb on - strandat 747.683 kb on - strandat 747.752 kb on - strandat 747.752 kb on - strandat 747.765 kb on - strandat 747.785 kb on + strandat 747.785 kb on + strandat 747.786 kb on - strandat 747.804 kb on - strandat 747.805 kb on + strandat 747.864 kb on - strandat 747.957 kb on - strand, within CA264_03195at 747.963 kb on - strand, within CA264_03195at 747.965 kb on + strand, within CA264_03195at 747.965 kb on + strand, within CA264_03195at 747.965 kb on + strand, within CA264_03195at 748.049 kb on - strand, within CA264_03195at 748.134 kb on - strand, within CA264_03195at 748.184 kb on - strand, within CA264_03195at 748.246 kb on - strand, within CA264_03195at 748.256 kb on - strand, within CA264_03195at 748.289 kb on + strand, within CA264_03195at 748.295 kb on - strand, within CA264_03195at 748.295 kb on - strand, within CA264_03195at 748.295 kb on - strand, within CA264_03195at 748.295 kb on - strand, within CA264_03195at 748.327 kb on + strand, within CA264_03195at 748.362 kb on + strand, within CA264_03195at 748.363 kb on - strand, within CA264_03195at 748.363 kb on - strand, within CA264_03195at 748.454 kb on - strand, within CA264_03195at 748.462 kb on - strand, within CA264_03195at 748.485 kb on + strand, within CA264_03195at 748.486 kb on - strand, within CA264_03195at 748.823 kb on + strand, within CA264_03195at 748.876 kb on + strand, within CA264_03195at 748.877 kb on - strand, within CA264_03195at 748.903 kb on + strand, within CA264_03195at 748.915 kb on + strand, within CA264_03195at 748.945 kb on + strand, within CA264_03195at 748.946 kb on - strand, within CA264_03195at 748.946 kb on - strand, within CA264_03195at 748.971 kb on + strand, within CA264_03195at 748.972 kb on - strand, within CA264_03195at 749.010 kb on - strand, within CA264_03195at 749.113 kb on + strand, within CA264_03195at 749.114 kb on - strand, within CA264_03195at 749.127 kb on + strand, within CA264_03195at 749.243 kb on + strandat 749.244 kb on - strandat 749.244 kb on - strandat 749.288 kb on + strandat 749.320 kb on + strandat 749.321 kb on - strandat 749.321 kb on - strandat 749.385 kb on - strandat 749.385 kb on - strandat 749.385 kb on - strandat 749.402 kb on - strandat 749.413 kb on - strandat 749.419 kb on + strandat 749.419 kb on + strandat 749.420 kb on - strandat 749.457 kb on - strandat 749.518 kb on + strandat 749.518 kb on + strandat 749.523 kb on + strandat 749.524 kb on - strandat 749.534 kb on + strandat 749.541 kb on + strandat 749.542 kb on - strandat 749.549 kb on - strandat 749.708 kb on - strand, within CA264_03200at 749.708 kb on - strand, within CA264_03200at 749.708 kb on - strand, within CA264_03200at 749.708 kb on - strand, within CA264_03200at 749.784 kb on + strand, within CA264_03200at 749.785 kb on - strand, within CA264_03200at 749.785 kb on - strand, within CA264_03200at 749.942 kb on + strand, within CA264_03200at 749.942 kb on + strand, within CA264_03200at 749.942 kb on + strand, within CA264_03200at 750.037 kb on - strand, within CA264_03200at 750.122 kb on - strand, within CA264_03200at 750.122 kb on - strand, within CA264_03200at 750.122 kb on - strand, within CA264_03200at 750.122 kb on - strand, within CA264_03200at 750.144 kb on - strand, within CA264_03200at 750.159 kb on + strand, within CA264_03200at 750.199 kb on - strand, within CA264_03200at 750.244 kb on - strand, within CA264_03200at 750.244 kb on - strand, within CA264_03200at 750.268 kb on + strand, within CA264_03200at 750.268 kb on + strand, within CA264_03200at 750.269 kb on - strand, within CA264_03200at 750.353 kb on - strand, within CA264_03200at 750.354 kb on + strand, within CA264_03200at 750.354 kb on + strand, within CA264_03200at 750.354 kb on + strand, within CA264_03200at 750.355 kb on - strandat 750.355 kb on - strand, within CA264_03200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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746,792 + +0.2
746,793 - -1.4
746,950 - -1.1
746,952 - -1.9
747,380 + CA264_03190 0.77 -0.5
747,380 + CA264_03190 0.77 -0.2
747,380 + CA264_03190 0.77 -1.2
747,380 + CA264_03190 0.77 -0.3
747,393 + CA264_03190 0.80 -1.6
747,484 - -0.9
747,490 + -0.3
747,490 + -0.2
747,491 - -0.1
747,491 - -0.1
747,507 - +0.2
747,575 + -0.8
747,652 + -0.9
747,652 + -0.9
747,662 - +0.7
747,672 - -0.8
747,682 + -0.4
747,682 + -1.0
747,682 + +3.1
747,682 + +0.9
747,682 + +0.0
747,682 + -1.1
747,683 - +1.2
747,683 - +0.4
747,752 - -0.6
747,752 - +0.4
747,765 - -0.7
747,785 + -0.3
747,785 + -0.6
747,786 - -0.5
747,804 - +0.2
747,805 + +0.7
747,864 - +1.1
747,957 - CA264_03195 0.12 -0.8
747,963 - CA264_03195 0.13 -0.1
747,965 + CA264_03195 0.13 +0.2
747,965 + CA264_03195 0.13 -0.3
747,965 + CA264_03195 0.13 +1.2
748,049 - CA264_03195 0.18 +0.3
748,134 - CA264_03195 0.23 -0.8
748,184 - CA264_03195 0.26 -0.1
748,246 - CA264_03195 0.30 +0.2
748,256 - CA264_03195 0.30 -1.1
748,289 + CA264_03195 0.32 +1.5
748,295 - CA264_03195 0.33 -0.3
748,295 - CA264_03195 0.33 -0.4
748,295 - CA264_03195 0.33 +0.5
748,295 - CA264_03195 0.33 -0.2
748,327 + CA264_03195 0.35 -0.2
748,362 + CA264_03195 0.37 -0.5
748,363 - CA264_03195 0.37 -0.4
748,363 - CA264_03195 0.37 -1.3
748,454 - CA264_03195 0.42 -0.4
748,462 - CA264_03195 0.43 -0.1
748,485 + CA264_03195 0.44 +0.1
748,486 - CA264_03195 0.44 -0.1
748,823 + CA264_03195 0.65 +0.5
748,876 + CA264_03195 0.68 -0.9
748,877 - CA264_03195 0.68 +0.3
748,903 + CA264_03195 0.70 -0.5
748,915 + CA264_03195 0.70 -0.2
748,945 + CA264_03195 0.72 +0.3
748,946 - CA264_03195 0.72 -0.9
748,946 - CA264_03195 0.72 +0.2
748,971 + CA264_03195 0.74 +0.2
748,972 - CA264_03195 0.74 -0.9
749,010 - CA264_03195 0.76 -1.3
749,113 + CA264_03195 0.82 -0.6
749,114 - CA264_03195 0.82 +0.4
749,127 + CA264_03195 0.83 -1.2
749,243 + -0.8
749,244 - +0.2
749,244 - -0.4
749,288 + -2.3
749,320 + +0.5
749,321 - -0.7
749,321 - -0.2
749,385 - -0.5
749,385 - +0.0
749,385 - +0.0
749,402 - +0.3
749,413 - +0.1
749,419 + +0.7
749,419 + +0.4
749,420 - +0.1
749,457 - -0.4
749,518 + +1.4
749,518 + +1.2
749,523 + +0.2
749,524 - +0.2
749,534 + +0.6
749,541 + +0.6
749,542 - +0.8
749,549 - +1.8
749,708 - CA264_03200 0.11 +1.1
749,708 - CA264_03200 0.11 +0.4
749,708 - CA264_03200 0.11 +0.4
749,708 - CA264_03200 0.11 -0.1
749,784 + CA264_03200 0.16 +0.4
749,785 - CA264_03200 0.16 +0.3
749,785 - CA264_03200 0.16 +1.7
749,942 + CA264_03200 0.27 -0.7
749,942 + CA264_03200 0.27 +0.3
749,942 + CA264_03200 0.27 +0.6
750,037 - CA264_03200 0.33 +0.8
750,122 - CA264_03200 0.39 +1.2
750,122 - CA264_03200 0.39 +0.5
750,122 - CA264_03200 0.39 +0.2
750,122 - CA264_03200 0.39 +0.4
750,144 - CA264_03200 0.40 -0.3
750,159 + CA264_03200 0.41 +0.5
750,199 - CA264_03200 0.44 +0.4
750,244 - CA264_03200 0.47 +1.1
750,244 - CA264_03200 0.47 +0.4
750,268 + CA264_03200 0.49 +0.7
750,268 + CA264_03200 0.49 +0.4
750,269 - CA264_03200 0.49 +1.4
750,353 - CA264_03200 0.55 +0.5
750,354 + CA264_03200 0.55 +0.0
750,354 + CA264_03200 0.55 -0.1
750,354 + CA264_03200 0.55 +0.5
750,355 - +2.2
750,355 - CA264_03200 0.55 +0.5

Or see this region's nucleotide sequence