Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02700

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02690 and CA264_02695 overlap by 14 nucleotidesCA264_02695 and CA264_02700 are separated by 223 nucleotidesCA264_02700 and CA264_02705 are separated by 93 nucleotides CA264_02690: CA264_02690 - rhodanese, at 621,849 to 622,328 _02690 CA264_02695: CA264_02695 - glycosyltransferase, at 622,315 to 622,911 _02695 CA264_02700: CA264_02700 - TIGR02453 family protein, at 623,135 to 623,821 _02700 CA264_02705: CA264_02705 - hypothetical protein, at 623,915 to 624,976 _02705 Position (kb) 623 624Strain fitness (log2 ratio) -2 -1 0 1 2at 622.156 kb on + strand, within CA264_02690at 622.157 kb on - strand, within CA264_02690at 622.173 kb on - strand, within CA264_02690at 622.180 kb on + strand, within CA264_02690at 622.180 kb on + strand, within CA264_02690at 622.181 kb on - strand, within CA264_02690at 622.270 kb on - strand, within CA264_02690at 622.270 kb on - strand, within CA264_02690at 622.312 kb on + strandat 622.312 kb on + strandat 622.313 kb on - strandat 622.313 kb on - strandat 622.327 kb on - strandat 622.331 kb on + strandat 622.420 kb on + strand, within CA264_02695at 622.421 kb on - strand, within CA264_02695at 622.421 kb on - strand, within CA264_02695at 622.421 kb on - strand, within CA264_02695at 622.424 kb on + strand, within CA264_02695at 622.424 kb on + strand, within CA264_02695at 622.425 kb on - strand, within CA264_02695at 622.483 kb on + strand, within CA264_02695at 622.486 kb on + strand, within CA264_02695at 622.487 kb on - strand, within CA264_02695at 622.499 kb on + strand, within CA264_02695at 622.531 kb on + strand, within CA264_02695at 622.660 kb on - strand, within CA264_02695at 622.663 kb on - strand, within CA264_02695at 622.663 kb on - strand, within CA264_02695at 622.663 kb on - strand, within CA264_02695at 622.685 kb on + strand, within CA264_02695at 622.730 kb on - strand, within CA264_02695at 622.733 kb on - strand, within CA264_02695at 622.872 kb on - strandat 622.872 kb on - strandat 622.920 kb on + strandat 622.939 kb on + strandat 622.958 kb on + strandat 622.958 kb on + strandat 622.959 kb on - strandat 622.991 kb on + strandat 622.991 kb on + strandat 622.992 kb on - strandat 623.017 kb on + strandat 623.018 kb on - strandat 623.034 kb on + strandat 623.034 kb on + strandat 623.034 kb on + strandat 623.035 kb on - strandat 623.037 kb on - strandat 623.041 kb on - strandat 623.041 kb on - strandat 623.112 kb on + strandat 623.149 kb on - strandat 623.149 kb on - strandat 623.158 kb on + strandat 623.165 kb on - strandat 623.191 kb on + strandat 623.192 kb on - strandat 623.275 kb on - strand, within CA264_02700at 623.368 kb on + strand, within CA264_02700at 623.399 kb on + strand, within CA264_02700at 623.419 kb on + strand, within CA264_02700at 623.442 kb on - strand, within CA264_02700at 623.442 kb on - strand, within CA264_02700at 623.464 kb on + strand, within CA264_02700at 623.465 kb on - strand, within CA264_02700at 623.512 kb on - strand, within CA264_02700at 623.540 kb on - strand, within CA264_02700at 623.636 kb on + strand, within CA264_02700at 623.663 kb on + strand, within CA264_02700at 623.664 kb on - strandat 623.692 kb on - strand, within CA264_02700at 623.819 kb on + strandat 623.819 kb on + strandat 623.820 kb on - strandat 623.820 kb on - strandat 623.824 kb on + strandat 623.824 kb on + strandat 623.825 kb on - strandat 623.865 kb on - strandat 623.907 kb on - strandat 623.907 kb on - strandat 623.907 kb on - strandat 623.916 kb on + strandat 623.917 kb on - strandat 623.917 kb on - strandat 623.938 kb on - strandat 623.994 kb on - strandat 623.994 kb on - strandat 624.066 kb on + strand, within CA264_02705at 624.099 kb on - strand, within CA264_02705at 624.121 kb on - strand, within CA264_02705at 624.123 kb on + strand, within CA264_02705at 624.124 kb on - strand, within CA264_02705at 624.124 kb on - strand, within CA264_02705at 624.124 kb on - strand, within CA264_02705at 624.143 kb on + strand, within CA264_02705at 624.187 kb on - strand, within CA264_02705at 624.191 kb on + strand, within CA264_02705at 624.191 kb on + strand, within CA264_02705at 624.192 kb on - strand, within CA264_02705at 624.215 kb on + strand, within CA264_02705at 624.242 kb on + strand, within CA264_02705at 624.243 kb on - strand, within CA264_02705at 624.243 kb on - strand, within CA264_02705at 624.243 kb on - strand, within CA264_02705at 624.243 kb on - strand, within CA264_02705at 624.243 kb on - strand, within CA264_02705at 624.243 kb on - strand, within CA264_02705at 624.251 kb on - strand, within CA264_02705at 624.253 kb on - strand, within CA264_02705at 624.279 kb on + strand, within CA264_02705at 624.280 kb on - strand, within CA264_02705at 624.322 kb on + strand, within CA264_02705at 624.323 kb on - strand, within CA264_02705at 624.323 kb on - strand, within CA264_02705at 624.324 kb on + strand, within CA264_02705at 624.325 kb on - strand, within CA264_02705at 624.325 kb on - strand, within CA264_02705at 624.345 kb on - strand, within CA264_02705at 624.373 kb on - strand, within CA264_02705at 624.424 kb on - strand, within CA264_02705at 624.427 kb on + strand, within CA264_02705at 624.427 kb on + strand, within CA264_02705at 624.427 kb on + strand, within CA264_02705at 624.427 kb on + strand, within CA264_02705at 624.428 kb on - strand, within CA264_02705at 624.428 kb on - strand, within CA264_02705at 624.432 kb on + strand, within CA264_02705at 624.490 kb on - strand, within CA264_02705at 624.532 kb on + strand, within CA264_02705at 624.533 kb on - strand, within CA264_02705at 624.549 kb on + strand, within CA264_02705at 624.549 kb on + strand, within CA264_02705at 624.608 kb on + strand, within CA264_02705at 624.654 kb on + strand, within CA264_02705at 624.654 kb on + strand, within CA264_02705at 624.654 kb on + strand, within CA264_02705at 624.692 kb on + strand, within CA264_02705at 624.693 kb on - strand, within CA264_02705at 624.694 kb on + strand, within CA264_02705at 624.695 kb on - strand, within CA264_02705at 624.695 kb on - strand, within CA264_02705at 624.697 kb on + strand, within CA264_02705at 624.698 kb on - strand, within CA264_02705at 624.698 kb on - strand, within CA264_02705at 624.753 kb on - strand, within CA264_02705at 624.810 kb on + strand, within CA264_02705

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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622,156 + CA264_02690 0.64 -0.8
622,157 - CA264_02690 0.64 -0.3
622,173 - CA264_02690 0.68 +0.2
622,180 + CA264_02690 0.69 -1.2
622,180 + CA264_02690 0.69 -0.2
622,181 - CA264_02690 0.69 -0.1
622,270 - CA264_02690 0.88 -2.0
622,270 - CA264_02690 0.88 +0.9
622,312 + -0.4
622,312 + -0.0
622,313 - +0.2
622,313 - -0.8
622,327 - +0.6
622,331 + -1.0
622,420 + CA264_02695 0.18 -0.7
622,421 - CA264_02695 0.18 -0.3
622,421 - CA264_02695 0.18 -0.3
622,421 - CA264_02695 0.18 +0.3
622,424 + CA264_02695 0.18 -2.1
622,424 + CA264_02695 0.18 +0.2
622,425 - CA264_02695 0.18 +0.1
622,483 + CA264_02695 0.28 +0.0
622,486 + CA264_02695 0.29 -0.1
622,487 - CA264_02695 0.29 +0.1
622,499 + CA264_02695 0.31 -0.4
622,531 + CA264_02695 0.36 -0.5
622,660 - CA264_02695 0.58 -0.2
622,663 - CA264_02695 0.58 -0.4
622,663 - CA264_02695 0.58 -0.6
622,663 - CA264_02695 0.58 -0.9
622,685 + CA264_02695 0.62 +0.7
622,730 - CA264_02695 0.70 -1.4
622,733 - CA264_02695 0.70 -0.1
622,872 - +0.6
622,872 - -0.8
622,920 + -0.2
622,939 + -1.4
622,958 + +0.5
622,958 + -0.5
622,959 - -0.4
622,991 + -1.1
622,991 + +1.2
622,992 - -0.3
623,017 + -1.8
623,018 - -0.5
623,034 + -0.1
623,034 + +1.5
623,034 + -0.4
623,035 - -2.3
623,037 - +0.0
623,041 - -0.4
623,041 - +0.2
623,112 + -1.1
623,149 - -0.6
623,149 - +0.3
623,158 + -1.6
623,165 - -0.6
623,191 + -0.4
623,192 - -0.7
623,275 - CA264_02700 0.20 -0.1
623,368 + CA264_02700 0.34 +0.5
623,399 + CA264_02700 0.38 -0.1
623,419 + CA264_02700 0.41 -0.7
623,442 - CA264_02700 0.45 +0.1
623,442 - CA264_02700 0.45 +0.1
623,464 + CA264_02700 0.48 -0.2
623,465 - CA264_02700 0.48 +0.2
623,512 - CA264_02700 0.55 -0.3
623,540 - CA264_02700 0.59 +0.3
623,636 + CA264_02700 0.73 -1.5
623,663 + CA264_02700 0.77 -0.5
623,664 - +1.9
623,692 - CA264_02700 0.81 -0.3
623,819 + -0.7
623,819 + -0.1
623,820 - -0.3
623,820 - -0.2
623,824 + -0.4
623,824 + -1.3
623,825 - +1.2
623,865 - -0.2
623,907 - -0.5
623,907 - +1.5
623,907 - +0.0
623,916 + -0.7
623,917 - -0.5
623,917 - +0.4
623,938 - +0.5
623,994 - +0.1
623,994 - -0.3
624,066 + CA264_02705 0.14 -1.8
624,099 - CA264_02705 0.17 -0.7
624,121 - CA264_02705 0.19 -0.0
624,123 + CA264_02705 0.20 -0.6
624,124 - CA264_02705 0.20 -0.0
624,124 - CA264_02705 0.20 -0.7
624,124 - CA264_02705 0.20 -0.7
624,143 + CA264_02705 0.21 +0.7
624,187 - CA264_02705 0.26 +1.7
624,191 + CA264_02705 0.26 -1.7
624,191 + CA264_02705 0.26 +0.1
624,192 - CA264_02705 0.26 +0.2
624,215 + CA264_02705 0.28 -0.5
624,242 + CA264_02705 0.31 -0.3
624,243 - CA264_02705 0.31 +0.1
624,243 - CA264_02705 0.31 -0.1
624,243 - CA264_02705 0.31 -0.2
624,243 - CA264_02705 0.31 -0.1
624,243 - CA264_02705 0.31 +0.2
624,243 - CA264_02705 0.31 +0.1
624,251 - CA264_02705 0.32 +0.3
624,253 - CA264_02705 0.32 -0.2
624,279 + CA264_02705 0.34 +0.6
624,280 - CA264_02705 0.34 -0.1
624,322 + CA264_02705 0.38 -0.3
624,323 - CA264_02705 0.38 -0.5
624,323 - CA264_02705 0.38 -0.1
624,324 + CA264_02705 0.39 +0.1
624,325 - CA264_02705 0.39 +0.3
624,325 - CA264_02705 0.39 +0.2
624,345 - CA264_02705 0.40 -0.5
624,373 - CA264_02705 0.43 -0.4
624,424 - CA264_02705 0.48 +0.1
624,427 + CA264_02705 0.48 -0.6
624,427 + CA264_02705 0.48 -0.5
624,427 + CA264_02705 0.48 -0.9
624,427 + CA264_02705 0.48 +0.6
624,428 - CA264_02705 0.48 -0.7
624,428 - CA264_02705 0.48 -0.4
624,432 + CA264_02705 0.49 -0.1
624,490 - CA264_02705 0.54 +0.3
624,532 + CA264_02705 0.58 -0.7
624,533 - CA264_02705 0.58 -1.0
624,549 + CA264_02705 0.60 -0.4
624,549 + CA264_02705 0.60 -0.7
624,608 + CA264_02705 0.65 -0.5
624,654 + CA264_02705 0.70 -0.3
624,654 + CA264_02705 0.70 +0.2
624,654 + CA264_02705 0.70 -0.9
624,692 + CA264_02705 0.73 +1.7
624,693 - CA264_02705 0.73 +0.2
624,694 + CA264_02705 0.73 -0.8
624,695 - CA264_02705 0.73 -0.1
624,695 - CA264_02705 0.73 -0.4
624,697 + CA264_02705 0.74 -0.6
624,698 - CA264_02705 0.74 -0.8
624,698 - CA264_02705 0.74 -0.4
624,753 - CA264_02705 0.79 -0.2
624,810 + CA264_02705 0.84 -0.8

Or see this region's nucleotide sequence