Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02320

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02310 and CA264_02315 are separated by 29 nucleotidesCA264_02315 and CA264_02320 are separated by 52 nucleotidesCA264_02320 and CA264_02325 are separated by 219 nucleotides CA264_02310: CA264_02310 - hypothetical protein, at 533,620 to 534,171 _02310 CA264_02315: CA264_02315 - curli production assembly/transport component CsgF, at 534,201 to 534,629 _02315 CA264_02320: CA264_02320 - curli production assembly/transport component CsgG, at 534,682 to 536,088 _02320 CA264_02325: CA264_02325 - hypothetical protein, at 536,308 to 537,714 _02325 Position (kb) 534 535 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 533.685 kb on + strand, within CA264_02310at 533.687 kb on + strand, within CA264_02310at 533.688 kb on - strand, within CA264_02310at 533.688 kb on - strand, within CA264_02310at 533.688 kb on - strand, within CA264_02310at 533.798 kb on - strand, within CA264_02310at 533.902 kb on + strand, within CA264_02310at 533.903 kb on - strand, within CA264_02310at 533.903 kb on - strand, within CA264_02310at 533.957 kb on + strand, within CA264_02310at 533.957 kb on + strand, within CA264_02310at 533.957 kb on + strand, within CA264_02310at 533.957 kb on + strand, within CA264_02310at 533.958 kb on - strand, within CA264_02310at 533.958 kb on - strand, within CA264_02310at 533.964 kb on + strand, within CA264_02310at 534.052 kb on + strand, within CA264_02310at 534.052 kb on + strand, within CA264_02310at 534.052 kb on + strand, within CA264_02310at 534.079 kb on + strand, within CA264_02310at 534.080 kb on - strand, within CA264_02310at 534.097 kb on + strand, within CA264_02310at 534.097 kb on + strand, within CA264_02310at 534.182 kb on + strandat 534.182 kb on + strandat 534.182 kb on + strandat 534.182 kb on + strandat 534.183 kb on - strandat 534.183 kb on - strandat 534.183 kb on - strandat 534.186 kb on + strandat 534.186 kb on + strandat 534.186 kb on + strandat 534.215 kb on + strandat 534.216 kb on - strandat 534.286 kb on - strand, within CA264_02315at 534.327 kb on + strand, within CA264_02315at 534.328 kb on - strand, within CA264_02315at 534.328 kb on - strand, within CA264_02315at 534.377 kb on + strand, within CA264_02315at 534.431 kb on + strand, within CA264_02315at 534.516 kb on + strand, within CA264_02315at 534.517 kb on - strand, within CA264_02315at 534.538 kb on + strand, within CA264_02315at 534.538 kb on + strand, within CA264_02315at 534.545 kb on - strand, within CA264_02315at 534.621 kb on + strandat 534.681 kb on + strandat 534.681 kb on + strandat 534.682 kb on - strandat 534.682 kb on - strandat 534.761 kb on - strandat 534.818 kb on - strandat 534.831 kb on - strand, within CA264_02320at 534.831 kb on - strand, within CA264_02320at 534.930 kb on + strand, within CA264_02320at 534.930 kb on + strand, within CA264_02320at 534.930 kb on + strand, within CA264_02320at 535.289 kb on - strand, within CA264_02320at 535.519 kb on + strand, within CA264_02320at 535.556 kb on + strand, within CA264_02320at 535.557 kb on - strand, within CA264_02320at 535.621 kb on + strand, within CA264_02320at 535.625 kb on - strand, within CA264_02320at 535.660 kb on - strand, within CA264_02320at 535.683 kb on - strand, within CA264_02320at 535.697 kb on - strand, within CA264_02320at 535.764 kb on + strand, within CA264_02320at 535.765 kb on - strand, within CA264_02320at 535.765 kb on - strand, within CA264_02320at 535.768 kb on + strand, within CA264_02320at 535.789 kb on + strand, within CA264_02320at 535.790 kb on - strand, within CA264_02320at 535.790 kb on - strand, within CA264_02320at 535.790 kb on - strand, within CA264_02320at 535.808 kb on + strand, within CA264_02320at 535.808 kb on + strand, within CA264_02320at 535.809 kb on - strand, within CA264_02320at 535.910 kb on - strand, within CA264_02320at 535.955 kb on + strandat 535.955 kb on + strandat 535.956 kb on - strandat 535.985 kb on - strandat 536.023 kb on - strandat 536.038 kb on + strandat 536.069 kb on - strandat 536.069 kb on - strandat 536.096 kb on - strandat 536.109 kb on + strandat 536.109 kb on + strandat 536.155 kb on - strandat 536.261 kb on + strandat 536.261 kb on + strandat 536.272 kb on + strandat 536.272 kb on + strandat 536.283 kb on - strandat 536.302 kb on - strandat 536.305 kb on - strandat 536.321 kb on + strandat 536.321 kb on + strandat 536.326 kb on + strandat 536.326 kb on + strandat 536.326 kb on + strandat 536.327 kb on - strandat 536.511 kb on + strand, within CA264_02325at 536.535 kb on + strand, within CA264_02325at 536.535 kb on + strand, within CA264_02325at 536.535 kb on + strand, within CA264_02325at 536.536 kb on - strand, within CA264_02325at 536.536 kb on - strand, within CA264_02325at 536.538 kb on + strand, within CA264_02325at 536.601 kb on + strand, within CA264_02325at 536.601 kb on + strand, within CA264_02325at 536.656 kb on - strand, within CA264_02325at 536.793 kb on + strand, within CA264_02325at 536.799 kb on + strand, within CA264_02325at 536.879 kb on + strand, within CA264_02325at 536.879 kb on + strand, within CA264_02325at 536.880 kb on - strand, within CA264_02325at 536.949 kb on - strand, within CA264_02325at 536.949 kb on - strand, within CA264_02325at 536.949 kb on - strand, within CA264_02325at 536.966 kb on + strand, within CA264_02325at 536.966 kb on + strand, within CA264_02325at 537.043 kb on + strand, within CA264_02325at 537.044 kb on - strand, within CA264_02325at 537.046 kb on - strand, within CA264_02325

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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533,685 + CA264_02310 0.12 -0.2
533,687 + CA264_02310 0.12 -0.2
533,688 - CA264_02310 0.12 -1.4
533,688 - CA264_02310 0.12 -0.3
533,688 - CA264_02310 0.12 -0.2
533,798 - CA264_02310 0.32 -0.3
533,902 + CA264_02310 0.51 -0.1
533,903 - CA264_02310 0.51 -0.6
533,903 - CA264_02310 0.51 +0.2
533,957 + CA264_02310 0.61 -0.5
533,957 + CA264_02310 0.61 -0.6
533,957 + CA264_02310 0.61 +0.5
533,957 + CA264_02310 0.61 -0.2
533,958 - CA264_02310 0.61 +1.2
533,958 - CA264_02310 0.61 -0.4
533,964 + CA264_02310 0.62 +1.8
534,052 + CA264_02310 0.78 -1.4
534,052 + CA264_02310 0.78 +0.9
534,052 + CA264_02310 0.78 -0.4
534,079 + CA264_02310 0.83 -0.0
534,080 - CA264_02310 0.83 -0.2
534,097 + CA264_02310 0.86 -0.5
534,097 + CA264_02310 0.86 -1.3
534,182 + -0.2
534,182 + -0.4
534,182 + -0.6
534,182 + +0.2
534,183 - -0.0
534,183 - +0.2
534,183 - +0.0
534,186 + +2.5
534,186 + -0.6
534,186 + -0.7
534,215 + -0.8
534,216 - +0.1
534,286 - CA264_02315 0.20 +0.4
534,327 + CA264_02315 0.29 -0.3
534,328 - CA264_02315 0.30 -0.3
534,328 - CA264_02315 0.30 +0.4
534,377 + CA264_02315 0.41 -0.7
534,431 + CA264_02315 0.54 -0.2
534,516 + CA264_02315 0.73 -0.6
534,517 - CA264_02315 0.74 -0.4
534,538 + CA264_02315 0.79 +1.8
534,538 + CA264_02315 0.79 -0.8
534,545 - CA264_02315 0.80 -0.1
534,621 + -0.2
534,681 + -0.2
534,681 + +0.7
534,682 - +0.5
534,682 - +0.1
534,761 - +0.7
534,818 - -0.1
534,831 - CA264_02320 0.11 -0.2
534,831 - CA264_02320 0.11 +0.0
534,930 + CA264_02320 0.18 +0.2
534,930 + CA264_02320 0.18 +0.4
534,930 + CA264_02320 0.18 -0.9
535,289 - CA264_02320 0.43 -2.9
535,519 + CA264_02320 0.59 +1.3
535,556 + CA264_02320 0.62 -0.2
535,557 - CA264_02320 0.62 -0.5
535,621 + CA264_02320 0.67 -0.8
535,625 - CA264_02320 0.67 +0.5
535,660 - CA264_02320 0.70 -0.1
535,683 - CA264_02320 0.71 +0.9
535,697 - CA264_02320 0.72 -0.3
535,764 + CA264_02320 0.77 +1.0
535,765 - CA264_02320 0.77 -0.4
535,765 - CA264_02320 0.77 -0.6
535,768 + CA264_02320 0.77 +0.2
535,789 + CA264_02320 0.79 -0.3
535,790 - CA264_02320 0.79 -0.1
535,790 - CA264_02320 0.79 -0.1
535,790 - CA264_02320 0.79 -0.3
535,808 + CA264_02320 0.80 +0.4
535,808 + CA264_02320 0.80 -0.2
535,809 - CA264_02320 0.80 +0.7
535,910 - CA264_02320 0.87 -0.3
535,955 + -0.2
535,955 + -0.8
535,956 - -1.1
535,985 - +0.2
536,023 - -0.3
536,038 + +0.5
536,069 - -0.3
536,069 - +0.1
536,096 - -0.7
536,109 + -0.7
536,109 + +0.1
536,155 - -0.5
536,261 + +0.2
536,261 + +1.0
536,272 + -0.5
536,272 + +0.3
536,283 - -0.1
536,302 - +0.6
536,305 - +0.1
536,321 + -0.3
536,321 + -1.3
536,326 + -0.8
536,326 + -0.1
536,326 + -0.7
536,327 - -0.2
536,511 + CA264_02325 0.14 +0.5
536,535 + CA264_02325 0.16 +0.3
536,535 + CA264_02325 0.16 +0.0
536,535 + CA264_02325 0.16 -1.0
536,536 - CA264_02325 0.16 -0.1
536,536 - CA264_02325 0.16 -0.4
536,538 + CA264_02325 0.16 +0.1
536,601 + CA264_02325 0.21 +0.2
536,601 + CA264_02325 0.21 +0.5
536,656 - CA264_02325 0.25 +0.5
536,793 + CA264_02325 0.34 -0.2
536,799 + CA264_02325 0.35 +0.5
536,879 + CA264_02325 0.41 -0.5
536,879 + CA264_02325 0.41 +0.0
536,880 - CA264_02325 0.41 -0.9
536,949 - CA264_02325 0.46 -1.6
536,949 - CA264_02325 0.46 -0.2
536,949 - CA264_02325 0.46 +0.1
536,966 + CA264_02325 0.47 -1.2
536,966 + CA264_02325 0.47 +0.1
537,043 + CA264_02325 0.52 +0.1
537,044 - CA264_02325 0.52 -0.2
537,046 - CA264_02325 0.52 +0.3

Or see this region's nucleotide sequence