Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02175 and CA264_02180 are separated by 313 nucleotides CA264_02180 and CA264_02185 are separated by 156 nucleotides CA264_02185 and CA264_02190 are separated by 89 nucleotides
CA264_02175: CA264_02175 - acyl-CoA desaturase, at 501,120 to 502,232
_02175
CA264_02180: CA264_02180 - response regulator, at 502,546 to 502,914
_02180
CA264_02185: CA264_02185 - GNAT family N-acetyltransferase, at 503,071 to 503,595
_02185
CA264_02190: CA264_02190 - hypothetical protein, at 503,685 to 504,674
_02190
Position (kb) 503
504 Strain fitness (log2 ratio) -2
-1
0
1
2 at 502.129 kb on + strand at 502.129 kb on + strand at 502.129 kb on + strand at 502.130 kb on - strand at 502.130 kb on - strand at 502.130 kb on - strand at 502.130 kb on - strand at 502.135 kb on - strand at 502.135 kb on - strand at 502.135 kb on - strand at 502.135 kb on - strand at 502.242 kb on + strand at 502.243 kb on - strand at 502.245 kb on - strand at 502.245 kb on - strand at 502.250 kb on - strand at 502.250 kb on - strand at 502.463 kb on - strand at 502.471 kb on + strand at 502.472 kb on - strand at 502.472 kb on - strand at 502.474 kb on + strand at 502.474 kb on + strand at 502.474 kb on + strand at 502.474 kb on + strand at 502.475 kb on - strand at 502.476 kb on + strand at 502.476 kb on + strand at 502.476 kb on + strand at 502.476 kb on + strand at 502.476 kb on + strand at 502.476 kb on + strand at 502.477 kb on - strand at 502.477 kb on - strand at 502.477 kb on - strand at 502.534 kb on - strand at 502.543 kb on + strand at 502.544 kb on - strand at 502.544 kb on - strand at 502.544 kb on - strand at 502.572 kb on + strand at 502.616 kb on + strand, within CA264_02180 at 502.645 kb on - strand, within CA264_02180 at 502.831 kb on + strand, within CA264_02180 at 502.857 kb on - strand, within CA264_02180 at 502.889 kb on + strand at 502.889 kb on + strand at 502.890 kb on - strand at 502.913 kb on - strand at 502.932 kb on + strand at 502.933 kb on - strand at 502.967 kb on + strand at 503.031 kb on - strand at 503.031 kb on - strand at 503.042 kb on + strand at 503.043 kb on - strand at 503.155 kb on + strand, within CA264_02185 at 503.156 kb on - strand, within CA264_02185 at 503.189 kb on - strand, within CA264_02185 at 503.263 kb on + strand, within CA264_02185 at 503.304 kb on - strand, within CA264_02185 at 503.362 kb on + strand, within CA264_02185 at 503.426 kb on - strand, within CA264_02185 at 503.460 kb on - strand, within CA264_02185 at 503.658 kb on - strand at 503.672 kb on - strand at 503.680 kb on - strand at 503.712 kb on + strand at 503.712 kb on + strand at 503.713 kb on - strand at 503.713 kb on - strand at 503.713 kb on - strand at 503.713 kb on - strand at 503.713 kb on - strand at 503.717 kb on + strand at 503.718 kb on - strand at 503.719 kb on + strand at 503.719 kb on + strand at 503.720 kb on - strand at 503.784 kb on - strand, within CA264_02190 at 503.784 kb on - strand, within CA264_02190 at 503.784 kb on - strand, within CA264_02190 at 503.937 kb on + strand, within CA264_02190 at 503.937 kb on + strand, within CA264_02190 at 503.941 kb on - strand, within CA264_02190 at 503.992 kb on + strand, within CA264_02190 at 504.084 kb on + strand, within CA264_02190 at 504.084 kb on + strand, within CA264_02190 at 504.084 kb on + strand, within CA264_02190 at 504.085 kb on - strand, within CA264_02190 at 504.085 kb on - strand, within CA264_02190 at 504.085 kb on - strand, within CA264_02190 at 504.085 kb on - strand, within CA264_02190 at 504.142 kb on - strand, within CA264_02190 at 504.142 kb on - strand, within CA264_02190 at 504.160 kb on - strand, within CA264_02190 at 504.162 kb on + strand, within CA264_02190 at 504.283 kb on + strand, within CA264_02190 at 504.283 kb on + strand, within CA264_02190 at 504.283 kb on + strand, within CA264_02190 at 504.335 kb on - strand, within CA264_02190 at 504.335 kb on - strand, within CA264_02190 at 504.343 kb on - strand, within CA264_02190 at 504.356 kb on + strand, within CA264_02190 at 504.356 kb on + strand, within CA264_02190 at 504.357 kb on - strand, within CA264_02190 at 504.382 kb on + strand, within CA264_02190 at 504.383 kb on - strand, within CA264_02190 at 504.410 kb on + strand, within CA264_02190 at 504.520 kb on - strand, within CA264_02190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 502,129 + +0.2 502,129 + +0.2 502,129 + +0.2 502,130 - +0.1 502,130 - +0.3 502,130 - +0.3 502,130 - +0.1 502,135 - -0.2 502,135 - -0.7 502,135 - +0.3 502,135 - -0.2 502,242 + +0.4 502,243 - -0.4 502,245 - -0.6 502,245 - +0.3 502,250 - +0.1 502,250 - +0.8 502,463 - +1.0 502,471 + +0.2 502,472 - -1.3 502,472 - -0.5 502,474 + +0.2 502,474 + +0.2 502,474 + -0.5 502,474 + +1.0 502,475 - -0.2 502,476 + +0.1 502,476 + -0.0 502,476 + -0.6 502,476 + -1.0 502,476 + -0.3 502,476 + +0.2 502,477 - -1.3 502,477 - +1.0 502,477 - -2.2 502,534 - -1.0 502,543 + +0.0 502,544 - -0.2 502,544 - -0.3 502,544 - -0.1 502,572 + +0.5 502,616 + CA264_02180 0.19 -0.0 502,645 - CA264_02180 0.27 +0.1 502,831 + CA264_02180 0.77 +0.7 502,857 - CA264_02180 0.84 -0.5 502,889 + +1.4 502,889 + -1.5 502,890 - -0.4 502,913 - +0.4 502,932 + -0.4 502,933 - +0.0 502,967 + -0.3 503,031 - -0.2 503,031 - +0.1 503,042 + -0.4 503,043 - -0.3 503,155 + CA264_02185 0.16 +0.5 503,156 - CA264_02185 0.16 +0.7 503,189 - CA264_02185 0.22 -1.0 503,263 + CA264_02185 0.37 -0.1 503,304 - CA264_02185 0.44 +0.7 503,362 + CA264_02185 0.55 +1.0 503,426 - CA264_02185 0.68 -0.0 503,460 - CA264_02185 0.74 +0.6 503,658 - +0.5 503,672 - +0.8 503,680 - -0.1 503,712 + +1.1 503,712 + -0.3 503,713 - -0.6 503,713 - +2.2 503,713 - +0.4 503,713 - -0.5 503,713 - +0.1 503,717 + +0.6 503,718 - -1.1 503,719 + +0.2 503,719 + -2.0 503,720 - -0.7 503,784 - CA264_02190 0.10 -0.4 503,784 - CA264_02190 0.10 -0.5 503,784 - CA264_02190 0.10 +0.3 503,937 + CA264_02190 0.25 -0.0 503,937 + CA264_02190 0.25 -0.2 503,941 - CA264_02190 0.26 -1.0 503,992 + CA264_02190 0.31 -1.4 504,084 + CA264_02190 0.40 -0.6 504,084 + CA264_02190 0.40 -0.5 504,084 + CA264_02190 0.40 +0.3 504,085 - CA264_02190 0.40 -0.6 504,085 - CA264_02190 0.40 -0.4 504,085 - CA264_02190 0.40 -0.7 504,085 - CA264_02190 0.40 +0.7 504,142 - CA264_02190 0.46 -1.2 504,142 - CA264_02190 0.46 -1.3 504,160 - CA264_02190 0.48 +0.5 504,162 + CA264_02190 0.48 +1.2 504,283 + CA264_02190 0.60 +0.1 504,283 + CA264_02190 0.60 -0.8 504,283 + CA264_02190 0.60 +0.2 504,335 - CA264_02190 0.66 -0.1 504,335 - CA264_02190 0.66 -0.1 504,343 - CA264_02190 0.66 +1.1 504,356 + CA264_02190 0.68 -0.1 504,356 + CA264_02190 0.68 -1.4 504,357 - CA264_02190 0.68 +1.0 504,382 + CA264_02190 0.70 -0.2 504,383 - CA264_02190 0.71 +0.2 504,410 + CA264_02190 0.73 +1.2 504,520 - CA264_02190 0.84 -0.5
Or see this region's nucleotide sequence