Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01415 and CA264_01420 are separated by 82 nucleotides CA264_01420 and CA264_01425 are separated by 248 nucleotides CA264_01425 and CA264_01430 are separated by 27 nucleotides CA264_01430 and CA264_01435 overlap by 23 nucleotides CA264_01435 and CA264_01440 are separated by 8 nucleotides
CA264_01415: CA264_01415 - trigger factor, at 337,261 to 338,583
_01415
CA264_01420: CA264_01420 - tRNA-Leu, at 338,666 to 338,747
_01420
CA264_01425: CA264_01425 - RelA/SpoT family protein, at 338,996 to 341,188
_01425
CA264_01430: CA264_01430 - transcriptional repressor, at 341,216 to 341,710
_01430
CA264_01435: CA264_01435 - anti-anti-sigma factor, at 341,688 to 342,038
_01435
CA264_01440: CA264_01440 - adenylosuccinate synthase, at 342,047 to 343,330
_01440
Position (kb) 338
339
340
341
342 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 338.007 kb on + strand, within CA264_01415 at 338.008 kb on - strand, within CA264_01415 at 338.021 kb on - strand, within CA264_01415 at 338.091 kb on + strand, within CA264_01415 at 338.203 kb on + strand, within CA264_01415 at 338.204 kb on - strand, within CA264_01415 at 338.356 kb on - strand, within CA264_01415 at 338.356 kb on - strand, within CA264_01415 at 338.412 kb on - strand, within CA264_01415 at 338.438 kb on - strand, within CA264_01415 at 338.569 kb on + strand at 338.612 kb on + strand at 338.616 kb on + strand at 338.641 kb on + strand at 338.766 kb on - strand at 338.783 kb on - strand at 338.796 kb on - strand at 338.807 kb on - strand at 338.847 kb on - strand at 338.883 kb on - strand at 338.896 kb on + strand at 338.897 kb on - strand at 338.897 kb on - strand at 338.906 kb on + strand at 338.909 kb on - strand at 338.919 kb on + strand at 338.936 kb on - strand at 338.936 kb on - strand at 338.939 kb on + strand at 338.939 kb on + strand at 338.940 kb on - strand at 338.940 kb on - strand at 338.941 kb on + strand at 338.942 kb on - strand at 338.945 kb on + strand at 338.945 kb on + strand at 338.945 kb on + strand at 338.945 kb on + strand at 338.946 kb on - strand at 338.946 kb on - strand at 338.946 kb on - strand at 338.946 kb on - strand at 338.946 kb on - strand at 338.947 kb on + strand at 338.948 kb on - strand at 338.948 kb on - strand at 338.948 kb on - strand at 338.977 kb on + strand at 338.977 kb on + strand at 338.978 kb on - strand at 338.979 kb on + strand at 338.979 kb on + strand at 338.979 kb on + strand at 338.979 kb on + strand at 338.979 kb on + strand at 338.982 kb on + strand at 338.982 kb on + strand at 338.982 kb on + strand at 338.983 kb on - strand at 338.983 kb on - strand at 338.983 kb on - strand at 338.983 kb on - strand at 338.984 kb on + strand at 338.985 kb on - strand at 338.985 kb on - strand at 338.993 kb on - strand at 339.006 kb on + strand at 339.007 kb on - strand at 339.027 kb on + strand at 339.028 kb on - strand at 339.030 kb on + strand at 339.031 kb on - strand at 339.038 kb on + strand at 339.057 kb on - strand at 339.161 kb on + strand at 339.161 kb on + strand at 339.161 kb on + strand at 339.161 kb on + strand at 339.161 kb on + strand at 339.162 kb on - strand at 339.221 kb on - strand, within CA264_01425 at 339.321 kb on + strand, within CA264_01425 at 339.519 kb on - strand, within CA264_01425 at 339.519 kb on - strand, within CA264_01425 at 339.554 kb on + strand, within CA264_01425 at 339.554 kb on + strand, within CA264_01425 at 339.555 kb on - strand, within CA264_01425 at 339.555 kb on - strand, within CA264_01425 at 339.585 kb on - strand, within CA264_01425 at 339.608 kb on - strand, within CA264_01425 at 339.608 kb on - strand, within CA264_01425 at 339.609 kb on + strand, within CA264_01425 at 339.609 kb on + strand, within CA264_01425 at 339.609 kb on + strand, within CA264_01425 at 339.609 kb on + strand, within CA264_01425 at 339.609 kb on + strand, within CA264_01425 at 339.609 kb on + strand, within CA264_01425 at 339.610 kb on - strand, within CA264_01425 at 339.610 kb on - strand, within CA264_01425 at 339.611 kb on + strand, within CA264_01425 at 339.611 kb on + strand, within CA264_01425 at 339.611 kb on + strand, within CA264_01425 at 339.611 kb on + strand, within CA264_01425 at 339.611 kb on + strand, within CA264_01425 at 339.611 kb on + strand, within CA264_01425 at 339.611 kb on + strand, within CA264_01425 at 339.611 kb on + strand, within CA264_01425 at 339.612 kb on - strand, within CA264_01425 at 339.612 kb on - strand, within CA264_01425 at 339.612 kb on - strand, within CA264_01425 at 339.676 kb on + strand, within CA264_01425 at 339.688 kb on - strand, within CA264_01425 at 339.707 kb on + strand, within CA264_01425 at 339.707 kb on + strand, within CA264_01425 at 339.707 kb on + strand, within CA264_01425 at 339.707 kb on + strand, within CA264_01425 at 339.707 kb on + strand, within CA264_01425 at 339.707 kb on + strand, within CA264_01425 at 339.707 kb on + strand, within CA264_01425 at 339.708 kb on - strand, within CA264_01425 at 339.708 kb on - strand, within CA264_01425 at 339.715 kb on + strand, within CA264_01425 at 339.749 kb on + strand, within CA264_01425 at 339.749 kb on + strand, within CA264_01425 at 339.749 kb on + strand, within CA264_01425 at 339.750 kb on - strand, within CA264_01425 at 339.750 kb on - strand, within CA264_01425 at 339.750 kb on - strand, within CA264_01425 at 339.872 kb on + strand, within CA264_01425 at 339.872 kb on + strand, within CA264_01425 at 339.872 kb on + strand, within CA264_01425 at 339.872 kb on + strand, within CA264_01425 at 339.872 kb on + strand, within CA264_01425 at 339.872 kb on + strand, within CA264_01425 at 339.873 kb on - strand, within CA264_01425 at 339.873 kb on - strand, within CA264_01425 at 339.873 kb on - strand, within CA264_01425 at 339.873 kb on - strand, within CA264_01425 at 339.873 kb on - strand, within CA264_01425 at 339.873 kb on - strand, within CA264_01425 at 339.873 kb on - strand, within CA264_01425 at 339.877 kb on + strand, within CA264_01425 at 339.878 kb on - strand, within CA264_01425 at 339.878 kb on - strand, within CA264_01425 at 339.878 kb on - strand, within CA264_01425 at 339.878 kb on - strand, within CA264_01425 at 339.881 kb on - strand, within CA264_01425 at 339.881 kb on - strand, within CA264_01425 at 339.882 kb on + strand, within CA264_01425 at 339.883 kb on - strand, within CA264_01425 at 339.883 kb on - strand, within CA264_01425 at 340.022 kb on - strand, within CA264_01425 at 340.047 kb on - strand, within CA264_01425 at 340.064 kb on + strand, within CA264_01425 at 340.065 kb on - strand, within CA264_01425 at 340.065 kb on - strand, within CA264_01425 at 340.066 kb on + strand, within CA264_01425 at 340.235 kb on - strand, within CA264_01425 at 340.235 kb on - strand, within CA264_01425 at 340.246 kb on + strand, within CA264_01425 at 340.318 kb on - strand, within CA264_01425 at 340.343 kb on + strand, within CA264_01425 at 340.344 kb on - strand, within CA264_01425 at 340.344 kb on - strand, within CA264_01425 at 340.345 kb on + strand, within CA264_01425 at 340.418 kb on + strand, within CA264_01425 at 340.418 kb on + strand, within CA264_01425 at 340.418 kb on + strand, within CA264_01425 at 340.450 kb on + strand, within CA264_01425 at 340.577 kb on - strand, within CA264_01425 at 340.601 kb on + strand, within CA264_01425 at 340.601 kb on + strand, within CA264_01425 at 340.625 kb on - strand, within CA264_01425 at 341.162 kb on - strand at 341.197 kb on + strand at 341.198 kb on - strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.208 kb on + strand at 341.209 kb on - strand at 341.210 kb on + strand at 341.210 kb on + strand at 341.211 kb on - strand at 341.214 kb on + strand at 341.214 kb on + strand at 341.215 kb on - strand at 341.224 kb on - strand at 341.224 kb on - strand at 341.231 kb on - strand at 341.231 kb on - strand at 341.327 kb on + strand, within CA264_01430 at 341.411 kb on + strand, within CA264_01430 at 341.411 kb on + strand, within CA264_01430 at 341.576 kb on - strand, within CA264_01430 at 341.576 kb on - strand, within CA264_01430 at 341.634 kb on + strand, within CA264_01430 at 341.634 kb on + strand, within CA264_01430 at 341.635 kb on - strand, within CA264_01430 at 341.694 kb on + strand at 341.708 kb on + strand at 341.709 kb on - strand at 341.796 kb on + strand, within CA264_01435 at 341.797 kb on - strand, within CA264_01435 at 341.835 kb on - strand, within CA264_01435 at 341.924 kb on + strand, within CA264_01435 at 341.959 kb on + strand, within CA264_01435
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 338,007 + CA264_01415 0.56 -1.0 338,008 - CA264_01415 0.56 -1.1 338,021 - CA264_01415 0.57 +0.6 338,091 + CA264_01415 0.63 -0.6 338,203 + CA264_01415 0.71 -0.7 338,204 - CA264_01415 0.71 -0.2 338,356 - CA264_01415 0.83 +0.4 338,356 - CA264_01415 0.83 +0.6 338,412 - CA264_01415 0.87 -0.4 338,438 - CA264_01415 0.89 -2.1 338,569 + -0.6 338,612 + +0.3 338,616 + -0.2 338,641 + +0.5 338,766 - -0.3 338,783 - -0.1 338,796 - +1.3 338,807 - -0.9 338,847 - +0.7 338,883 - -0.6 338,896 + +0.2 338,897 - +1.2 338,897 - -0.6 338,906 + -0.2 338,909 - +0.4 338,919 + +0.7 338,936 - +0.1 338,936 - +0.1 338,939 + +1.3 338,939 + +0.3 338,940 - +0.9 338,940 - +1.3 338,941 + +1.3 338,942 - +0.1 338,945 + +1.9 338,945 + -0.1 338,945 + +0.2 338,945 + -0.9 338,946 - +0.1 338,946 - +0.1 338,946 - +0.8 338,946 - -0.3 338,946 - +0.3 338,947 + +0.4 338,948 - -0.8 338,948 - -0.3 338,948 - +0.2 338,977 + -0.2 338,977 + +0.3 338,978 - +0.6 338,979 + -0.9 338,979 + -0.7 338,979 + +0.9 338,979 + +0.2 338,979 + -0.0 338,982 + +0.2 338,982 + +0.3 338,982 + +0.3 338,983 - +0.0 338,983 - -0.5 338,983 - +3.0 338,983 - +0.6 338,984 + +0.3 338,985 - -0.3 338,985 - +0.4 338,993 - +0.0 339,006 + +1.6 339,007 - +0.1 339,027 + -0.8 339,028 - -0.8 339,030 + -0.5 339,031 - +0.7 339,038 + -1.4 339,057 - +1.0 339,161 + -1.5 339,161 + -1.5 339,161 + +0.1 339,161 + +1.8 339,161 + -2.0 339,162 - +1.3 339,221 - CA264_01425 0.10 -1.4 339,321 + CA264_01425 0.15 +0.0 339,519 - CA264_01425 0.24 -1.6 339,519 - CA264_01425 0.24 -2.0 339,554 + CA264_01425 0.25 -0.6 339,554 + CA264_01425 0.25 -1.9 339,555 - CA264_01425 0.25 +1.0 339,555 - CA264_01425 0.25 -0.6 339,585 - CA264_01425 0.27 -1.2 339,608 - CA264_01425 0.28 +0.6 339,608 - CA264_01425 0.28 -2.0 339,609 + CA264_01425 0.28 -1.6 339,609 + CA264_01425 0.28 +0.3 339,609 + CA264_01425 0.28 -1.7 339,609 + CA264_01425 0.28 -1.5 339,609 + CA264_01425 0.28 +0.8 339,609 + CA264_01425 0.28 -1.0 339,610 - CA264_01425 0.28 +1.6 339,610 - CA264_01425 0.28 -0.6 339,611 + CA264_01425 0.28 -0.8 339,611 + CA264_01425 0.28 -0.8 339,611 + CA264_01425 0.28 -1.2 339,611 + CA264_01425 0.28 -1.0 339,611 + CA264_01425 0.28 -1.0 339,611 + CA264_01425 0.28 -1.9 339,611 + CA264_01425 0.28 -1.8 339,611 + CA264_01425 0.28 -1.6 339,612 - CA264_01425 0.28 -0.1 339,612 - CA264_01425 0.28 -1.9 339,612 - CA264_01425 0.28 -2.0 339,676 + CA264_01425 0.31 -1.0 339,688 - CA264_01425 0.32 -0.7 339,707 + CA264_01425 0.32 +0.3 339,707 + CA264_01425 0.32 -0.6 339,707 + CA264_01425 0.32 -0.2 339,707 + CA264_01425 0.32 -1.3 339,707 + CA264_01425 0.32 -1.1 339,707 + CA264_01425 0.32 -0.7 339,707 + CA264_01425 0.32 -3.1 339,708 - CA264_01425 0.32 +0.0 339,708 - CA264_01425 0.32 -0.8 339,715 + CA264_01425 0.33 -1.0 339,749 + CA264_01425 0.34 -1.1 339,749 + CA264_01425 0.34 -0.4 339,749 + CA264_01425 0.34 -3.6 339,750 - CA264_01425 0.34 +0.3 339,750 - CA264_01425 0.34 +0.0 339,750 - CA264_01425 0.34 -1.8 339,872 + CA264_01425 0.40 +1.0 339,872 + CA264_01425 0.40 -0.2 339,872 + CA264_01425 0.40 -1.9 339,872 + CA264_01425 0.40 +0.7 339,872 + CA264_01425 0.40 -2.2 339,872 + CA264_01425 0.40 -0.9 339,873 - CA264_01425 0.40 -1.2 339,873 - CA264_01425 0.40 -0.6 339,873 - CA264_01425 0.40 -0.8 339,873 - CA264_01425 0.40 -1.3 339,873 - CA264_01425 0.40 -1.0 339,873 - CA264_01425 0.40 -2.1 339,873 - CA264_01425 0.40 -2.0 339,877 + CA264_01425 0.40 -0.7 339,878 - CA264_01425 0.40 +0.4 339,878 - CA264_01425 0.40 -0.8 339,878 - CA264_01425 0.40 -1.6 339,878 - CA264_01425 0.40 -1.4 339,881 - CA264_01425 0.40 +0.2 339,881 - CA264_01425 0.40 +0.8 339,882 + CA264_01425 0.40 -0.4 339,883 - CA264_01425 0.40 -1.4 339,883 - CA264_01425 0.40 -1.9 340,022 - CA264_01425 0.47 -1.7 340,047 - CA264_01425 0.48 -1.2 340,064 + CA264_01425 0.49 -1.5 340,065 - CA264_01425 0.49 +1.0 340,065 - CA264_01425 0.49 -1.6 340,066 + CA264_01425 0.49 -0.1 340,235 - CA264_01425 0.56 +0.7 340,235 - CA264_01425 0.56 +0.3 340,246 + CA264_01425 0.57 +1.2 340,318 - CA264_01425 0.60 +0.2 340,343 + CA264_01425 0.61 -0.2 340,344 - CA264_01425 0.61 -0.2 340,344 - CA264_01425 0.61 -0.6 340,345 + CA264_01425 0.62 +0.6 340,418 + CA264_01425 0.65 +2.2 340,418 + CA264_01425 0.65 +1.6 340,418 + CA264_01425 0.65 +1.9 340,450 + CA264_01425 0.66 +1.0 340,577 - CA264_01425 0.72 +1.1 340,601 + CA264_01425 0.73 -0.2 340,601 + CA264_01425 0.73 +1.1 340,625 - CA264_01425 0.74 +1.9 341,162 - +1.6 341,197 + +0.6 341,198 - -0.1 341,199 + -0.8 341,199 + +0.1 341,199 + -0.3 341,199 + +0.5 341,199 + +0.6 341,200 - -0.5 341,200 - +0.2 341,200 - -0.1 341,200 - -0.3 341,200 - +1.3 341,200 - +1.0 341,200 - -0.5 341,200 - +1.6 341,201 + -0.7 341,201 + +0.8 341,201 + +0.1 341,201 + -0.2 341,201 + +1.0 341,202 - -1.4 341,202 - -0.1 341,202 - +0.2 341,202 - -0.4 341,202 - -0.1 341,202 - -1.5 341,203 + -1.2 341,203 + +0.1 341,203 + +0.0 341,203 + -0.1 341,203 + +0.0 341,203 + -0.6 341,203 + -0.0 341,203 + -2.8 341,203 + +0.2 341,204 - +0.3 341,204 - +0.8 341,204 - -2.4 341,204 - +0.4 341,204 - -0.4 341,204 - +0.2 341,204 - -0.8 341,204 - -0.4 341,204 - +0.1 341,204 - -0.0 341,204 - -0.8 341,208 + -0.3 341,209 - -0.6 341,210 + -0.4 341,210 + -0.2 341,211 - -0.3 341,214 + +0.2 341,214 + -0.3 341,215 - -0.9 341,224 - +0.6 341,224 - +0.8 341,231 - -1.3 341,231 - -0.6 341,327 + CA264_01430 0.22 -3.2 341,411 + CA264_01430 0.39 -3.1 341,411 + CA264_01430 0.39 -3.3 341,576 - CA264_01430 0.73 -1.8 341,576 - CA264_01430 0.73 -2.2 341,634 + CA264_01430 0.84 -1.1 341,634 + CA264_01430 0.84 -3.9 341,635 - CA264_01430 0.85 -2.6 341,694 + -0.6 341,708 + +0.0 341,709 - +0.1 341,796 + CA264_01435 0.31 -0.9 341,797 - CA264_01435 0.31 -0.2 341,835 - CA264_01435 0.42 -0.4 341,924 + CA264_01435 0.67 -0.4 341,959 + CA264_01435 0.77 +0.9
Or see this region's nucleotide sequence