Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01405 and CA264_01410 are separated by 351 nucleotides CA264_01410 and CA264_01415 are separated by 88 nucleotides
CA264_01405: CA264_01405 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 334,896 to 336,119
_01405
CA264_01410: CA264_01410 - ATP-dependent Clp protease proteolytic subunit, at 336,471 to 337,172
_01410
CA264_01415: CA264_01415 - trigger factor, at 337,261 to 338,583
_01415
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1 at 335.479 kb on - strand, within CA264_01405 at 335.586 kb on + strand, within CA264_01405 at 335.600 kb on - strand, within CA264_01405 at 335.631 kb on - strand, within CA264_01405 at 335.633 kb on - strand, within CA264_01405 at 335.646 kb on + strand, within CA264_01405 at 335.657 kb on + strand, within CA264_01405 at 335.658 kb on - strand, within CA264_01405 at 335.661 kb on + strand, within CA264_01405 at 335.662 kb on - strand, within CA264_01405 at 335.683 kb on - strand, within CA264_01405 at 335.703 kb on + strand, within CA264_01405 at 335.704 kb on - strand, within CA264_01405 at 335.704 kb on - strand, within CA264_01405 at 335.765 kb on - strand, within CA264_01405 at 335.795 kb on + strand, within CA264_01405 at 335.856 kb on - strand, within CA264_01405 at 335.857 kb on + strand, within CA264_01405 at 335.857 kb on + strand, within CA264_01405 at 335.858 kb on - strand, within CA264_01405 at 335.865 kb on - strand, within CA264_01405 at 335.866 kb on + strand, within CA264_01405 at 335.867 kb on - strand, within CA264_01405 at 336.073 kb on - strand at 336.330 kb on + strand at 336.351 kb on + strand at 336.451 kb on - strand at 336.457 kb on + strand at 336.458 kb on - strand at 336.460 kb on + strand at 336.462 kb on + strand at 336.462 kb on + strand at 336.463 kb on - strand at 336.465 kb on + strand at 336.465 kb on + strand at 336.472 kb on + strand at 336.764 kb on + strand, within CA264_01410 at 336.764 kb on + strand, within CA264_01410 at 336.807 kb on + strand, within CA264_01410 at 337.096 kb on + strand, within CA264_01410 at 337.096 kb on + strand, within CA264_01410 at 337.186 kb on - strand at 337.238 kb on + strand at 337.238 kb on + strand at 337.243 kb on + strand at 337.245 kb on + strand at 337.245 kb on + strand at 337.245 kb on + strand at 337.246 kb on - strand at 337.249 kb on + strand at 337.250 kb on - strand at 337.250 kb on - strand at 337.364 kb on + strand at 337.415 kb on + strand, within CA264_01415 at 337.578 kb on - strand, within CA264_01415 at 337.659 kb on + strand, within CA264_01415 at 337.864 kb on + strand, within CA264_01415 at 337.921 kb on + strand, within CA264_01415 at 338.007 kb on + strand, within CA264_01415 at 338.008 kb on - strand, within CA264_01415 at 338.021 kb on - strand, within CA264_01415 at 338.091 kb on + strand, within CA264_01415
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 335,479 - CA264_01405 0.48 +1.1 335,586 + CA264_01405 0.56 -0.8 335,600 - CA264_01405 0.58 -0.5 335,631 - CA264_01405 0.60 -0.4 335,633 - CA264_01405 0.60 -1.2 335,646 + CA264_01405 0.61 -0.6 335,657 + CA264_01405 0.62 +0.2 335,658 - CA264_01405 0.62 -0.4 335,661 + CA264_01405 0.62 +0.2 335,662 - CA264_01405 0.63 +0.3 335,683 - CA264_01405 0.64 -1.0 335,703 + CA264_01405 0.66 -0.7 335,704 - CA264_01405 0.66 +0.2 335,704 - CA264_01405 0.66 -0.8 335,765 - CA264_01405 0.71 -0.4 335,795 + CA264_01405 0.73 -0.8 335,856 - CA264_01405 0.78 -0.9 335,857 + CA264_01405 0.79 +0.7 335,857 + CA264_01405 0.79 -0.4 335,858 - CA264_01405 0.79 +0.0 335,865 - CA264_01405 0.79 +0.3 335,866 + CA264_01405 0.79 +0.0 335,867 - CA264_01405 0.79 -1.1 336,073 - -0.2 336,330 + +0.5 336,351 + +1.7 336,451 - +0.2 336,457 + +0.1 336,458 - -0.5 336,460 + +0.6 336,462 + -0.4 336,462 + -0.4 336,463 - -1.6 336,465 + +0.3 336,465 + +0.5 336,472 + +0.8 336,764 + CA264_01410 0.42 -1.4 336,764 + CA264_01410 0.42 +0.1 336,807 + CA264_01410 0.48 -1.0 337,096 + CA264_01410 0.89 -0.6 337,096 + CA264_01410 0.89 -1.0 337,186 - -0.2 337,238 + -1.4 337,238 + -0.7 337,243 + -0.8 337,245 + +0.5 337,245 + -2.5 337,245 + -0.4 337,246 - +0.7 337,249 + +0.8 337,250 - -1.4 337,250 - -0.0 337,364 + +0.0 337,415 + CA264_01415 0.12 -0.5 337,578 - CA264_01415 0.24 -0.0 337,659 + CA264_01415 0.30 -1.0 337,864 + CA264_01415 0.46 -0.4 337,921 + CA264_01415 0.50 -0.8 338,007 + CA264_01415 0.56 -1.0 338,008 - CA264_01415 0.56 -1.1 338,021 - CA264_01415 0.57 +0.6 338,091 + CA264_01415 0.63 -0.6
Or see this region's nucleotide sequence