Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01215

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01210 and CA264_01215 are separated by 553 nucleotidesCA264_01215 and CA264_01220 are separated by 559 nucleotides CA264_01210: CA264_01210 - hypothetical protein, at 279,600 to 285,683 _01210 CA264_01215: CA264_01215 - hypothetical protein, at 286,237 to 288,438 _01215 CA264_01220: CA264_01220 - hypothetical protein, at 288,998 to 290,794 _01220 Position (kb) 286 287 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 285.298 kb on + strandat 285.309 kb on + strandat 285.309 kb on + strandat 285.309 kb on + strandat 285.310 kb on - strandat 285.310 kb on - strandat 285.315 kb on + strandat 285.354 kb on + strandat 285.515 kb on - strandat 285.515 kb on - strandat 285.515 kb on - strandat 285.565 kb on + strandat 285.625 kb on - strandat 285.625 kb on - strandat 285.637 kb on + strandat 285.639 kb on + strandat 285.639 kb on + strandat 285.640 kb on - strandat 285.657 kb on + strandat 285.658 kb on - strandat 285.687 kb on + strandat 285.774 kb on + strandat 285.791 kb on + strandat 285.866 kb on - strandat 286.259 kb on + strandat 286.259 kb on + strandat 286.307 kb on - strandat 286.405 kb on + strandat 286.428 kb on + strandat 286.429 kb on - strandat 286.429 kb on - strandat 286.433 kb on + strandat 286.434 kb on - strandat 286.434 kb on - strandat 286.437 kb on + strandat 286.438 kb on - strandat 286.455 kb on - strandat 286.461 kb on + strand, within CA264_01215at 286.461 kb on + strand, within CA264_01215at 286.462 kb on - strand, within CA264_01215at 286.468 kb on + strand, within CA264_01215at 286.507 kb on + strand, within CA264_01215at 286.507 kb on + strand, within CA264_01215at 286.508 kb on - strand, within CA264_01215at 286.508 kb on - strand, within CA264_01215at 286.512 kb on + strand, within CA264_01215at 286.530 kb on + strand, within CA264_01215at 286.531 kb on - strand, within CA264_01215at 286.536 kb on - strand, within CA264_01215at 286.605 kb on - strand, within CA264_01215at 286.614 kb on + strand, within CA264_01215at 286.614 kb on + strand, within CA264_01215at 286.626 kb on + strand, within CA264_01215at 286.627 kb on - strand, within CA264_01215at 286.627 kb on - strand, within CA264_01215at 286.650 kb on + strand, within CA264_01215at 286.686 kb on + strand, within CA264_01215at 286.686 kb on + strand, within CA264_01215at 286.686 kb on + strand, within CA264_01215at 286.708 kb on - strand, within CA264_01215at 286.751 kb on + strand, within CA264_01215at 286.752 kb on - strand, within CA264_01215at 286.752 kb on - strand, within CA264_01215at 286.777 kb on - strand, within CA264_01215at 286.796 kb on + strand, within CA264_01215at 286.797 kb on - strand, within CA264_01215at 286.808 kb on + strand, within CA264_01215at 286.809 kb on - strand, within CA264_01215at 286.818 kb on + strand, within CA264_01215at 286.818 kb on + strand, within CA264_01215at 286.818 kb on + strand, within CA264_01215at 286.836 kb on + strand, within CA264_01215at 286.836 kb on + strand, within CA264_01215at 286.871 kb on + strand, within CA264_01215at 286.871 kb on + strand, within CA264_01215at 286.871 kb on + strand, within CA264_01215at 286.872 kb on - strand, within CA264_01215at 286.872 kb on - strand, within CA264_01215at 286.872 kb on - strand, within CA264_01215at 286.888 kb on - strand, within CA264_01215at 286.900 kb on - strand, within CA264_01215at 286.946 kb on - strand, within CA264_01215at 286.946 kb on - strand, within CA264_01215at 286.973 kb on + strand, within CA264_01215at 286.974 kb on - strand, within CA264_01215at 286.974 kb on - strand, within CA264_01215at 286.974 kb on - strand, within CA264_01215at 287.026 kb on + strand, within CA264_01215at 287.029 kb on + strand, within CA264_01215at 287.029 kb on + strand, within CA264_01215at 287.029 kb on + strand, within CA264_01215at 287.029 kb on + strand, within CA264_01215at 287.030 kb on - strand, within CA264_01215at 287.030 kb on - strand, within CA264_01215at 287.030 kb on - strand, within CA264_01215at 287.030 kb on - strand, within CA264_01215at 287.067 kb on + strand, within CA264_01215at 287.079 kb on - strand, within CA264_01215at 287.115 kb on - strand, within CA264_01215at 287.122 kb on - strand, within CA264_01215at 287.179 kb on - strand, within CA264_01215at 287.182 kb on - strand, within CA264_01215at 287.182 kb on - strand, within CA264_01215at 287.185 kb on + strand, within CA264_01215at 287.185 kb on + strand, within CA264_01215at 287.185 kb on + strand, within CA264_01215at 287.186 kb on - strand, within CA264_01215at 287.187 kb on + strand, within CA264_01215at 287.187 kb on + strand, within CA264_01215at 287.187 kb on + strand, within CA264_01215at 287.188 kb on - strand, within CA264_01215at 287.188 kb on - strand, within CA264_01215at 287.188 kb on - strand, within CA264_01215at 287.188 kb on - strand, within CA264_01215at 287.188 kb on - strand, within CA264_01215at 287.188 kb on - strand, within CA264_01215at 287.188 kb on - strand, within CA264_01215at 287.188 kb on - strand, within CA264_01215at 287.194 kb on + strand, within CA264_01215at 287.199 kb on + strand, within CA264_01215at 287.199 kb on + strand, within CA264_01215at 287.211 kb on + strand, within CA264_01215at 287.217 kb on + strand, within CA264_01215at 287.218 kb on - strand, within CA264_01215at 287.218 kb on - strand, within CA264_01215at 287.219 kb on + strand, within CA264_01215at 287.219 kb on + strand, within CA264_01215at 287.220 kb on - strand, within CA264_01215at 287.220 kb on - strand, within CA264_01215at 287.220 kb on - strand, within CA264_01215at 287.242 kb on + strand, within CA264_01215at 287.278 kb on + strand, within CA264_01215at 287.338 kb on - strand, within CA264_01215at 287.458 kb on + strand, within CA264_01215at 287.458 kb on + strand, within CA264_01215at 287.458 kb on + strand, within CA264_01215at 287.478 kb on + strand, within CA264_01215at 287.479 kb on - strand, within CA264_01215at 287.479 kb on - strand, within CA264_01215at 287.507 kb on + strand, within CA264_01215at 287.508 kb on - strand, within CA264_01215at 287.511 kb on + strand, within CA264_01215at 287.511 kb on + strand, within CA264_01215at 287.512 kb on - strand, within CA264_01215at 287.525 kb on - strand, within CA264_01215at 287.527 kb on + strand, within CA264_01215at 287.531 kb on + strand, within CA264_01215at 287.532 kb on - strand, within CA264_01215at 287.532 kb on - strand, within CA264_01215at 287.532 kb on - strand, within CA264_01215at 287.542 kb on - strand, within CA264_01215at 287.613 kb on + strand, within CA264_01215at 287.631 kb on - strand, within CA264_01215at 287.701 kb on - strand, within CA264_01215at 287.701 kb on - strand, within CA264_01215at 287.707 kb on + strand, within CA264_01215at 287.708 kb on - strand, within CA264_01215at 287.708 kb on - strand, within CA264_01215at 287.717 kb on + strand, within CA264_01215at 287.717 kb on + strand, within CA264_01215at 287.769 kb on - strand, within CA264_01215at 287.834 kb on - strand, within CA264_01215at 287.845 kb on + strand, within CA264_01215at 287.855 kb on + strand, within CA264_01215at 287.856 kb on - strand, within CA264_01215at 287.856 kb on - strand, within CA264_01215at 287.897 kb on - strand, within CA264_01215at 288.536 kb on + strandat 288.537 kb on - strandat 288.562 kb on + strandat 288.735 kb on - strandat 288.799 kb on + strandat 288.806 kb on - strandat 288.868 kb on - strandat 288.914 kb on - strandat 288.998 kb on - strandat 289.024 kb on + strandat 289.037 kb on + strandat 289.037 kb on + strandat 289.111 kb on + strandat 289.153 kb on - strandat 289.195 kb on + strand, within CA264_01220at 289.344 kb on + strand, within CA264_01220at 289.351 kb on - strand, within CA264_01220at 289.385 kb on + strand, within CA264_01220at 289.385 kb on + strand, within CA264_01220at 289.385 kb on - strand, within CA264_01220at 289.386 kb on - strand, within CA264_01220at 289.386 kb on - strand, within CA264_01220at 289.417 kb on - strand, within CA264_01220at 289.425 kb on + strand, within CA264_01220at 289.426 kb on - strand, within CA264_01220at 289.426 kb on - strand, within CA264_01220at 289.426 kb on - strand, within CA264_01220

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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285,298 + -0.2
285,309 + +0.3
285,309 + -2.5
285,309 + +0.0
285,310 - -1.1
285,310 - -0.5
285,315 + +0.0
285,354 + -0.2
285,515 - +0.4
285,515 - +2.0
285,515 - -1.8
285,565 + +0.0
285,625 - +0.9
285,625 - -0.8
285,637 + -0.8
285,639 + +0.3
285,639 + +0.6
285,640 - -0.0
285,657 + -1.9
285,658 - -0.1
285,687 + -0.3
285,774 + +0.4
285,791 + +0.2
285,866 - +0.4
286,259 + +1.0
286,259 + -0.4
286,307 - -1.0
286,405 + -0.2
286,428 + -0.7
286,429 - -1.0
286,429 - +0.3
286,433 + -0.5
286,434 - +0.2
286,434 - -1.5
286,437 + -0.2
286,438 - -1.2
286,455 - -0.8
286,461 + CA264_01215 0.10 +0.5
286,461 + CA264_01215 0.10 +0.0
286,462 - CA264_01215 0.10 -1.1
286,468 + CA264_01215 0.10 -0.8
286,507 + CA264_01215 0.12 -0.6
286,507 + CA264_01215 0.12 +0.5
286,508 - CA264_01215 0.12 -1.4
286,508 - CA264_01215 0.12 +1.2
286,512 + CA264_01215 0.12 -1.9
286,530 + CA264_01215 0.13 -0.6
286,531 - CA264_01215 0.13 +0.2
286,536 - CA264_01215 0.14 -0.4
286,605 - CA264_01215 0.17 -0.1
286,614 + CA264_01215 0.17 -0.3
286,614 + CA264_01215 0.17 +0.6
286,626 + CA264_01215 0.18 -0.2
286,627 - CA264_01215 0.18 +1.5
286,627 - CA264_01215 0.18 -0.5
286,650 + CA264_01215 0.19 -2.1
286,686 + CA264_01215 0.20 -0.3
286,686 + CA264_01215 0.20 -0.3
286,686 + CA264_01215 0.20 -0.4
286,708 - CA264_01215 0.21 -0.2
286,751 + CA264_01215 0.23 -0.1
286,752 - CA264_01215 0.23 -1.0
286,752 - CA264_01215 0.23 +0.8
286,777 - CA264_01215 0.25 -0.2
286,796 + CA264_01215 0.25 -0.2
286,797 - CA264_01215 0.25 -0.6
286,808 + CA264_01215 0.26 -0.4
286,809 - CA264_01215 0.26 +2.1
286,818 + CA264_01215 0.26 +0.8
286,818 + CA264_01215 0.26 -0.8
286,818 + CA264_01215 0.26 -0.0
286,836 + CA264_01215 0.27 -0.2
286,836 + CA264_01215 0.27 -1.0
286,871 + CA264_01215 0.29 -0.8
286,871 + CA264_01215 0.29 -0.8
286,871 + CA264_01215 0.29 +0.3
286,872 - CA264_01215 0.29 -0.4
286,872 - CA264_01215 0.29 +0.1
286,872 - CA264_01215 0.29 +0.4
286,888 - CA264_01215 0.30 +1.2
286,900 - CA264_01215 0.30 +0.6
286,946 - CA264_01215 0.32 -0.5
286,946 - CA264_01215 0.32 -1.4
286,973 + CA264_01215 0.33 -0.8
286,974 - CA264_01215 0.33 -0.6
286,974 - CA264_01215 0.33 +0.3
286,974 - CA264_01215 0.33 -0.4
287,026 + CA264_01215 0.36 -0.7
287,029 + CA264_01215 0.36 -0.3
287,029 + CA264_01215 0.36 +0.8
287,029 + CA264_01215 0.36 -0.3
287,029 + CA264_01215 0.36 -0.3
287,030 - CA264_01215 0.36 -0.9
287,030 - CA264_01215 0.36 -0.4
287,030 - CA264_01215 0.36 -0.8
287,030 - CA264_01215 0.36 -0.2
287,067 + CA264_01215 0.38 +0.4
287,079 - CA264_01215 0.38 +0.5
287,115 - CA264_01215 0.40 -0.6
287,122 - CA264_01215 0.40 -0.1
287,179 - CA264_01215 0.43 +1.0
287,182 - CA264_01215 0.43 -0.9
287,182 - CA264_01215 0.43 -1.0
287,185 + CA264_01215 0.43 -0.1
287,185 + CA264_01215 0.43 +0.0
287,185 + CA264_01215 0.43 +0.3
287,186 - CA264_01215 0.43 -0.0
287,187 + CA264_01215 0.43 -1.5
287,187 + CA264_01215 0.43 +0.0
287,187 + CA264_01215 0.43 -2.9
287,188 - CA264_01215 0.43 -0.5
287,188 - CA264_01215 0.43 -1.0
287,188 - CA264_01215 0.43 +0.4
287,188 - CA264_01215 0.43 -2.1
287,188 - CA264_01215 0.43 -0.4
287,188 - CA264_01215 0.43 +0.4
287,188 - CA264_01215 0.43 +0.3
287,188 - CA264_01215 0.43 -1.7
287,194 + CA264_01215 0.43 +0.3
287,199 + CA264_01215 0.44 -1.0
287,199 + CA264_01215 0.44 -0.1
287,211 + CA264_01215 0.44 -0.2
287,217 + CA264_01215 0.45 +0.8
287,218 - CA264_01215 0.45 -0.4
287,218 - CA264_01215 0.45 -0.4
287,219 + CA264_01215 0.45 -1.2
287,219 + CA264_01215 0.45 +0.1
287,220 - CA264_01215 0.45 -1.7
287,220 - CA264_01215 0.45 -0.6
287,220 - CA264_01215 0.45 +1.9
287,242 + CA264_01215 0.46 +0.7
287,278 + CA264_01215 0.47 -0.3
287,338 - CA264_01215 0.50 -0.1
287,458 + CA264_01215 0.55 -0.1
287,458 + CA264_01215 0.55 +0.8
287,458 + CA264_01215 0.55 -0.6
287,478 + CA264_01215 0.56 +0.0
287,479 - CA264_01215 0.56 -2.2
287,479 - CA264_01215 0.56 -0.6
287,507 + CA264_01215 0.58 -0.4
287,508 - CA264_01215 0.58 +0.2
287,511 + CA264_01215 0.58 -1.0
287,511 + CA264_01215 0.58 -0.0
287,512 - CA264_01215 0.58 -0.4
287,525 - CA264_01215 0.58 -0.9
287,527 + CA264_01215 0.59 -0.7
287,531 + CA264_01215 0.59 +0.2
287,532 - CA264_01215 0.59 -0.4
287,532 - CA264_01215 0.59 -0.6
287,532 - CA264_01215 0.59 -0.3
287,542 - CA264_01215 0.59 -0.2
287,613 + CA264_01215 0.62 +0.6
287,631 - CA264_01215 0.63 -0.7
287,701 - CA264_01215 0.66 +0.5
287,701 - CA264_01215 0.66 -0.6
287,707 + CA264_01215 0.67 +0.6
287,708 - CA264_01215 0.67 +0.1
287,708 - CA264_01215 0.67 +0.2
287,717 + CA264_01215 0.67 -0.6
287,717 + CA264_01215 0.67 -0.2
287,769 - CA264_01215 0.70 -0.4
287,834 - CA264_01215 0.73 -0.3
287,845 + CA264_01215 0.73 +0.6
287,855 + CA264_01215 0.73 +0.1
287,856 - CA264_01215 0.74 -1.3
287,856 - CA264_01215 0.74 +1.3
287,897 - CA264_01215 0.75 -0.2
288,536 + -0.2
288,537 - -0.1
288,562 + +0.7
288,735 - +1.5
288,799 + -0.1
288,806 - -0.3
288,868 - -0.8
288,914 - -0.1
288,998 - +0.2
289,024 + -1.9
289,037 + -0.6
289,037 + -1.3
289,111 + -0.5
289,153 - -0.7
289,195 + CA264_01220 0.11 -0.2
289,344 + CA264_01220 0.19 -0.3
289,351 - CA264_01220 0.20 +0.7
289,385 + CA264_01220 0.22 -0.2
289,385 + CA264_01220 0.22 +0.4
289,385 - CA264_01220 0.22 +0.6
289,386 - CA264_01220 0.22 +1.2
289,386 - CA264_01220 0.22 -0.6
289,417 - CA264_01220 0.23 -0.2
289,425 + CA264_01220 0.24 -0.9
289,426 - CA264_01220 0.24 -1.2
289,426 - CA264_01220 0.24 +0.3
289,426 - CA264_01220 0.24 -0.5

Or see this region's nucleotide sequence