Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00840 and CA264_00845 are separated by 86 nucleotides CA264_00845 and CA264_00850 are separated by 171 nucleotides CA264_00850 and CA264_00855 are separated by 2 nucleotides
CA264_00840: CA264_00840 - phosphoserine aminotransferase, at 178,942 to 180,003
_00840
CA264_00845: CA264_00845 - type II 3-dehydroquinate dehydratase, at 180,090 to 180,536
_00845
CA264_00850: CA264_00850 - site-specific tyrosine recombinase XerD, at 180,708 to 181,607
_00850
CA264_00855: CA264_00855 - RNA helicase, at 181,610 to 182,752
_00855
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 180.004 kb on - strand at 180.004 kb on - strand at 180.029 kb on - strand at 180.064 kb on + strand at 180.064 kb on + strand at 180.067 kb on + strand at 180.067 kb on + strand at 180.067 kb on + strand at 180.068 kb on - strand at 180.068 kb on - strand at 180.092 kb on - strand at 180.548 kb on + strand at 180.565 kb on + strand at 180.565 kb on + strand at 180.574 kb on - strand at 180.585 kb on - strand at 180.617 kb on - strand at 180.628 kb on - strand at 180.641 kb on + strand at 180.646 kb on - strand at 180.647 kb on + strand at 180.647 kb on + strand at 180.651 kb on + strand at 180.675 kb on + strand at 180.676 kb on - strand at 180.682 kb on + strand at 180.683 kb on - strand at 180.726 kb on - strand at 180.728 kb on - strand at 181.612 kb on - strand at 181.628 kb on + strand at 181.629 kb on - strand at 181.629 kb on - strand at 181.770 kb on + strand, within CA264_00855 at 181.770 kb on + strand, within CA264_00855 at 181.770 kb on + strand, within CA264_00855 at 181.770 kb on + strand, within CA264_00855 at 181.771 kb on - strand, within CA264_00855 at 181.797 kb on + strand, within CA264_00855 at 181.798 kb on - strand, within CA264_00855 at 182.082 kb on + strand, within CA264_00855 at 182.083 kb on - strand, within CA264_00855 at 182.237 kb on + strand, within CA264_00855 at 182.258 kb on - strand, within CA264_00855 at 182.307 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.408 kb on + strand, within CA264_00855 at 182.411 kb on - strand, within CA264_00855 at 182.426 kb on + strand, within CA264_00855 at 182.519 kb on + strand, within CA264_00855 at 182.519 kb on + strand, within CA264_00855 at 182.520 kb on - strand, within CA264_00855 at 182.520 kb on - strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.522 kb on - strand, within CA264_00855 at 182.522 kb on - strand, within CA264_00855 at 182.531 kb on + strand, within CA264_00855 at 182.574 kb on - strand, within CA264_00855 at 182.574 kb on - strand, within CA264_00855
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 180,004 - -1.1 180,004 - +1.2 180,029 - -1.0 180,064 + -1.6 180,064 + -1.7 180,067 + -1.0 180,067 + -0.2 180,067 + +0.0 180,068 - -1.3 180,068 - -1.5 180,092 - -0.7 180,548 + -1.1 180,565 + -0.5 180,565 + -0.7 180,574 - -1.2 180,585 - -1.0 180,617 - -1.6 180,628 - +0.1 180,641 + -0.9 180,646 - -1.0 180,647 + -0.8 180,647 + -1.1 180,651 + +0.3 180,675 + -0.7 180,676 - -0.9 180,682 + -0.2 180,683 - -0.4 180,726 - -2.3 180,728 - -2.3 181,612 - -1.2 181,628 + -0.2 181,629 - -1.8 181,629 - -1.5 181,770 + CA264_00855 0.14 -0.5 181,770 + CA264_00855 0.14 -1.3 181,770 + CA264_00855 0.14 -0.8 181,770 + CA264_00855 0.14 -0.3 181,771 - CA264_00855 0.14 -0.6 181,797 + CA264_00855 0.16 -1.6 181,798 - CA264_00855 0.16 -1.5 182,082 + CA264_00855 0.41 -0.7 182,083 - CA264_00855 0.41 -1.1 182,237 + CA264_00855 0.55 +0.4 182,258 - CA264_00855 0.57 -0.8 182,307 - CA264_00855 0.61 -0.9 182,373 - CA264_00855 0.67 -0.9 182,373 - CA264_00855 0.67 -0.4 182,373 - CA264_00855 0.67 -0.4 182,408 + CA264_00855 0.70 +0.9 182,411 - CA264_00855 0.70 -0.8 182,426 + CA264_00855 0.71 -0.5 182,519 + CA264_00855 0.80 -3.5 182,519 + CA264_00855 0.80 +0.6 182,520 - CA264_00855 0.80 -0.8 182,520 - CA264_00855 0.80 +0.3 182,521 + CA264_00855 0.80 +0.3 182,521 + CA264_00855 0.80 -0.9 182,521 + CA264_00855 0.80 -1.3 182,522 - CA264_00855 0.80 -0.7 182,522 - CA264_00855 0.80 +0.3 182,531 + CA264_00855 0.81 -0.1 182,574 - CA264_00855 0.84 -0.8 182,574 - CA264_00855 0.84 -1.1
Or see this region's nucleotide sequence