Experiment: m.b. Doxycycline hyclate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00770 and CA264_00775 are separated by 69 nucleotides CA264_00775 and CA264_00780 are separated by 127 nucleotides CA264_00780 and CA264_00785 are separated by 146 nucleotides
CA264_00770: CA264_00770 - prolipoprotein diacylglyceryl transferase, at 165,544 to 166,395
_00770
CA264_00775: CA264_00775 - hypothetical protein, at 166,465 to 167,307
_00775
CA264_00780: CA264_00780 - glyoxalase, at 167,435 to 167,833
_00780
CA264_00785: CA264_00785 - hypothetical protein, at 167,980 to 169,044
_00785
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2 at 165.467 kb on + strand at 165.468 kb on - strand at 165.490 kb on + strand at 165.491 kb on - strand at 165.530 kb on + strand at 165.530 kb on + strand at 165.531 kb on - strand at 165.531 kb on - strand at 166.394 kb on - strand at 166.410 kb on + strand at 166.467 kb on - strand at 166.467 kb on - strand at 166.578 kb on - strand, within CA264_00775 at 166.589 kb on + strand, within CA264_00775 at 166.589 kb on + strand, within CA264_00775 at 166.589 kb on + strand, within CA264_00775 at 166.590 kb on - strand, within CA264_00775 at 166.609 kb on - strand, within CA264_00775 at 166.609 kb on - strand, within CA264_00775 at 166.700 kb on - strand, within CA264_00775 at 166.730 kb on + strand, within CA264_00775 at 166.802 kb on + strand, within CA264_00775 at 166.802 kb on + strand, within CA264_00775 at 166.803 kb on - strand, within CA264_00775 at 166.804 kb on + strand, within CA264_00775 at 166.804 kb on + strand, within CA264_00775 at 166.804 kb on + strand, within CA264_00775 at 166.804 kb on + strand, within CA264_00775 at 166.805 kb on - strand, within CA264_00775 at 166.886 kb on + strand, within CA264_00775 at 166.887 kb on - strand, within CA264_00775 at 166.984 kb on + strand, within CA264_00775 at 166.984 kb on + strand, within CA264_00775 at 166.988 kb on + strand, within CA264_00775 at 166.989 kb on - strand, within CA264_00775 at 167.122 kb on + strand, within CA264_00775 at 167.122 kb on + strand, within CA264_00775 at 167.127 kb on - strand, within CA264_00775 at 167.281 kb on + strand at 167.281 kb on + strand at 167.293 kb on + strand at 167.294 kb on - strand at 167.310 kb on - strand at 167.313 kb on + strand at 167.314 kb on - strand at 167.318 kb on + strand at 167.332 kb on + strand at 167.333 kb on - strand at 167.336 kb on - strand at 167.336 kb on - strand at 167.336 kb on - strand at 167.337 kb on + strand at 167.399 kb on - strand at 167.468 kb on + strand at 167.514 kb on + strand, within CA264_00780 at 167.521 kb on + strand, within CA264_00780 at 167.577 kb on + strand, within CA264_00780 at 167.578 kb on - strand, within CA264_00780 at 167.667 kb on + strand, within CA264_00780 at 167.861 kb on + strand at 167.883 kb on - strand at 167.883 kb on - strand at 167.904 kb on + strand at 167.981 kb on + strand at 168.021 kb on - strand at 168.021 kb on - strand at 168.025 kb on + strand at 168.026 kb on - strand at 168.027 kb on + strand at 168.083 kb on + strand at 168.089 kb on + strand, within CA264_00785 at 168.089 kb on + strand, within CA264_00785 at 168.168 kb on - strand, within CA264_00785 at 168.168 kb on - strand, within CA264_00785 at 168.178 kb on + strand, within CA264_00785 at 168.224 kb on + strand, within CA264_00785 at 168.225 kb on - strand, within CA264_00785 at 168.302 kb on + strand, within CA264_00785
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml remove 165,467 + -0.6 165,468 - +1.1 165,490 + -0.5 165,491 - +1.8 165,530 + +0.3 165,530 + -0.0 165,531 - -0.3 165,531 - +0.1 166,394 - +0.6 166,410 + -0.2 166,467 - -1.2 166,467 - -1.2 166,578 - CA264_00775 0.13 +0.9 166,589 + CA264_00775 0.15 +0.3 166,589 + CA264_00775 0.15 -0.7 166,589 + CA264_00775 0.15 +0.2 166,590 - CA264_00775 0.15 +0.3 166,609 - CA264_00775 0.17 -0.4 166,609 - CA264_00775 0.17 -0.0 166,700 - CA264_00775 0.28 -0.7 166,730 + CA264_00775 0.31 +0.9 166,802 + CA264_00775 0.40 +0.5 166,802 + CA264_00775 0.40 -0.2 166,803 - CA264_00775 0.40 +0.0 166,804 + CA264_00775 0.40 +0.3 166,804 + CA264_00775 0.40 -0.8 166,804 + CA264_00775 0.40 +0.8 166,804 + CA264_00775 0.40 +2.6 166,805 - CA264_00775 0.40 +0.2 166,886 + CA264_00775 0.50 +0.0 166,887 - CA264_00775 0.50 -0.3 166,984 + CA264_00775 0.62 -0.0 166,984 + CA264_00775 0.62 +0.5 166,988 + CA264_00775 0.62 +0.1 166,989 - CA264_00775 0.62 +0.1 167,122 + CA264_00775 0.78 -0.1 167,122 + CA264_00775 0.78 +1.1 167,127 - CA264_00775 0.79 +0.1 167,281 + +0.2 167,281 + +0.8 167,293 + -0.2 167,294 - -0.3 167,310 - +1.0 167,313 + -2.7 167,314 - +1.2 167,318 + -0.4 167,332 + -0.4 167,333 - +1.7 167,336 - -0.0 167,336 - -0.0 167,336 - +0.3 167,337 + +0.1 167,399 - +0.2 167,468 + -0.8 167,514 + CA264_00780 0.20 -0.5 167,521 + CA264_00780 0.22 +0.1 167,577 + CA264_00780 0.36 +0.5 167,578 - CA264_00780 0.36 -0.9 167,667 + CA264_00780 0.58 -0.3 167,861 + -0.2 167,883 - -1.0 167,883 - -0.1 167,904 + -1.3 167,981 + -1.3 168,021 - -0.6 168,021 - -1.7 168,025 + +1.6 168,026 - -0.7 168,027 + -0.4 168,083 + -0.7 168,089 + CA264_00785 0.10 -0.5 168,089 + CA264_00785 0.10 +0.9 168,168 - CA264_00785 0.18 -0.2 168,168 - CA264_00785 0.18 +1.5 168,178 + CA264_00785 0.19 -0.5 168,224 + CA264_00785 0.23 -0.3 168,225 - CA264_00785 0.23 -0.3 168,302 + CA264_00785 0.30 -0.2
Or see this region's nucleotide sequence