Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00265

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00260 and CA264_00265 are separated by 65 nucleotidesCA264_00265 and CA264_00270 are separated by 2 nucleotides CA264_00260: CA264_00260 - magnesium and cobalt transport protein CorA, at 63,313 to 64,443 _00260 CA264_00265: CA264_00265 - YigZ family protein, at 64,509 to 65,120 _00265 CA264_00270: CA264_00270 - hypothetical protein, at 65,123 to 66,043 _00270 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.525 kb on + strand, within CA264_00260at 63.578 kb on + strand, within CA264_00260at 63.578 kb on + strand, within CA264_00260at 63.579 kb on - strand, within CA264_00260at 63.579 kb on - strand, within CA264_00260at 63.579 kb on - strand, within CA264_00260at 63.628 kb on + strand, within CA264_00260at 63.795 kb on + strand, within CA264_00260at 63.795 kb on + strand, within CA264_00260at 63.796 kb on - strand, within CA264_00260at 63.796 kb on - strand, within CA264_00260at 63.801 kb on + strand, within CA264_00260at 63.801 kb on + strand, within CA264_00260at 63.843 kb on - strand, within CA264_00260at 63.843 kb on - strand, within CA264_00260at 63.903 kb on - strand, within CA264_00260at 63.911 kb on + strand, within CA264_00260at 63.911 kb on + strand, within CA264_00260at 63.946 kb on + strand, within CA264_00260at 64.010 kb on + strand, within CA264_00260at 64.010 kb on + strand, within CA264_00260at 64.010 kb on + strand, within CA264_00260at 64.010 kb on + strand, within CA264_00260at 64.011 kb on - strand, within CA264_00260at 64.187 kb on - strand, within CA264_00260at 64.189 kb on + strand, within CA264_00260at 64.190 kb on - strand, within CA264_00260at 64.349 kb on + strandat 64.349 kb on + strandat 64.349 kb on + strandat 64.349 kb on + strandat 64.360 kb on - strandat 64.447 kb on - strandat 64.468 kb on + strandat 64.496 kb on - strandat 64.496 kb on - strandat 64.527 kb on + strandat 64.527 kb on + strandat 64.527 kb on + strandat 64.528 kb on - strandat 64.528 kb on - strandat 64.652 kb on - strand, within CA264_00265at 64.697 kb on - strand, within CA264_00265at 64.697 kb on - strand, within CA264_00265at 64.774 kb on + strand, within CA264_00265at 64.775 kb on - strand, within CA264_00265at 64.952 kb on - strand, within CA264_00265at 64.978 kb on + strand, within CA264_00265at 64.979 kb on - strand, within CA264_00265at 64.979 kb on - strand, within CA264_00265at 64.979 kb on - strand, within CA264_00265at 64.979 kb on - strand, within CA264_00265at 64.981 kb on + strand, within CA264_00265at 65.030 kb on - strand, within CA264_00265at 65.030 kb on - strand, within CA264_00265at 65.031 kb on + strand, within CA264_00265at 65.075 kb on - strandat 65.075 kb on - strandat 65.107 kb on + strandat 65.107 kb on + strandat 65.108 kb on - strandat 65.159 kb on - strandat 65.162 kb on + strandat 65.258 kb on - strand, within CA264_00270at 65.258 kb on - strand, within CA264_00270at 65.425 kb on + strand, within CA264_00270at 65.470 kb on + strand, within CA264_00270at 65.470 kb on + strand, within CA264_00270at 65.514 kb on + strand, within CA264_00270at 65.514 kb on + strand, within CA264_00270at 65.674 kb on + strand, within CA264_00270at 65.676 kb on + strand, within CA264_00270at 65.676 kb on + strand, within CA264_00270at 65.677 kb on - strand, within CA264_00270at 65.692 kb on - strand, within CA264_00270at 65.850 kb on + strand, within CA264_00270at 65.851 kb on - strand, within CA264_00270at 65.851 kb on - strand, within CA264_00270at 65.854 kb on - strand, within CA264_00270at 65.938 kb on - strand, within CA264_00270at 65.938 kb on - strand, within CA264_00270at 65.974 kb on - strandat 65.990 kb on - strandat 66.001 kb on + strandat 66.033 kb on + strandat 66.036 kb on + strandat 66.036 kb on + strandat 66.037 kb on - strandat 66.037 kb on - strandat 66.038 kb on + strandat 66.038 kb on + strandat 66.094 kb on + strandat 66.100 kb on + strandat 66.101 kb on - strandat 66.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
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63,525 + CA264_00260 0.19 -0.6
63,578 + CA264_00260 0.23 -0.6
63,578 + CA264_00260 0.23 -1.3
63,579 - CA264_00260 0.24 -0.3
63,579 - CA264_00260 0.24 -1.1
63,579 - CA264_00260 0.24 -0.8
63,628 + CA264_00260 0.28 -0.1
63,795 + CA264_00260 0.43 -0.5
63,795 + CA264_00260 0.43 +0.1
63,796 - CA264_00260 0.43 +0.3
63,796 - CA264_00260 0.43 -0.9
63,801 + CA264_00260 0.43 -0.9
63,801 + CA264_00260 0.43 -0.4
63,843 - CA264_00260 0.47 -0.9
63,843 - CA264_00260 0.47 -1.1
63,903 - CA264_00260 0.52 -0.2
63,911 + CA264_00260 0.53 -0.7
63,911 + CA264_00260 0.53 +2.7
63,946 + CA264_00260 0.56 -2.1
64,010 + CA264_00260 0.62 +0.7
64,010 + CA264_00260 0.62 -0.9
64,010 + CA264_00260 0.62 -0.3
64,010 + CA264_00260 0.62 -0.3
64,011 - CA264_00260 0.62 -1.4
64,187 - CA264_00260 0.77 -0.6
64,189 + CA264_00260 0.77 -1.9
64,190 - CA264_00260 0.78 +0.1
64,349 + -0.3
64,349 + -0.6
64,349 + -0.1
64,349 + +0.3
64,360 - -0.1
64,447 - +1.1
64,468 + -0.2
64,496 - -1.1
64,496 - -0.1
64,527 + -0.4
64,527 + -0.4
64,527 + -0.5
64,528 - +0.1
64,528 - +0.9
64,652 - CA264_00265 0.23 -0.0
64,697 - CA264_00265 0.31 -1.3
64,697 - CA264_00265 0.31 +0.3
64,774 + CA264_00265 0.43 +0.1
64,775 - CA264_00265 0.43 -1.3
64,952 - CA264_00265 0.72 -0.3
64,978 + CA264_00265 0.77 -1.4
64,979 - CA264_00265 0.77 +0.6
64,979 - CA264_00265 0.77 -1.1
64,979 - CA264_00265 0.77 -0.6
64,979 - CA264_00265 0.77 +0.1
64,981 + CA264_00265 0.77 -0.2
65,030 - CA264_00265 0.85 -0.4
65,030 - CA264_00265 0.85 -1.3
65,031 + CA264_00265 0.85 -0.5
65,075 - -0.3
65,075 - -1.3
65,107 + +0.1
65,107 + -0.5
65,108 - -0.2
65,159 - -1.1
65,162 + +1.4
65,258 - CA264_00270 0.15 -0.1
65,258 - CA264_00270 0.15 -0.3
65,425 + CA264_00270 0.33 -0.5
65,470 + CA264_00270 0.38 -0.1
65,470 + CA264_00270 0.38 -1.3
65,514 + CA264_00270 0.42 +0.8
65,514 + CA264_00270 0.42 +0.5
65,674 + CA264_00270 0.60 +0.1
65,676 + CA264_00270 0.60 -0.2
65,676 + CA264_00270 0.60 -1.3
65,677 - CA264_00270 0.60 -0.3
65,692 - CA264_00270 0.62 -0.5
65,850 + CA264_00270 0.79 +0.8
65,851 - CA264_00270 0.79 -0.3
65,851 - CA264_00270 0.79 -0.7
65,854 - CA264_00270 0.79 +0.2
65,938 - CA264_00270 0.88 -0.7
65,938 - CA264_00270 0.88 -0.6
65,974 - -0.2
65,990 - +0.5
66,001 + -0.2
66,033 + -0.8
66,036 + -0.2
66,036 + +0.2
66,037 - -0.6
66,037 - -0.1
66,038 + -0.2
66,038 + -1.3
66,094 + +1.0
66,100 + +3.5
66,101 - -0.3
66,101 - -0.1

Or see this region's nucleotide sequence