Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00090

Experiment: m.b. Doxycycline hyclate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_00080 and CA264_00085 are separated by 119 nucleotidesCA264_00085 and CA264_00090 overlap by 4 nucleotidesCA264_00090 and CA264_00095 are separated by 15 nucleotidesCA264_00095 and CA264_00100 are separated by 23 nucleotides CA264_00080: CA264_00080 - cation acetate symporter, at 20,628 to 22,319 _00080 CA264_00085: CA264_00085 - hypothetical protein, at 22,439 to 22,657 _00085 CA264_00090: CA264_00090 - histidine kinase, at 22,654 to 25,377 _00090 CA264_00095: CA264_00095 - response regulator, at 25,393 to 25,776 _00095 CA264_00100: CA264_00100 - acetate--CoA ligase, at 25,800 to 29,657 _00100 Position (kb) 22 23 24 25 26Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 21.654 kb on + strand, within CA264_00080at 21.674 kb on - strand, within CA264_00080at 21.689 kb on - strand, within CA264_00080at 21.745 kb on + strand, within CA264_00080at 21.813 kb on - strand, within CA264_00080at 21.818 kb on + strand, within CA264_00080at 21.819 kb on - strand, within CA264_00080at 21.899 kb on - strand, within CA264_00080at 21.942 kb on + strand, within CA264_00080at 21.943 kb on - strand, within CA264_00080at 22.013 kb on + strand, within CA264_00080at 22.099 kb on - strand, within CA264_00080at 22.205 kb on + strandat 22.222 kb on + strandat 22.328 kb on - strandat 22.375 kb on - strandat 22.423 kb on + strandat 22.423 kb on + strandat 22.424 kb on - strandat 22.424 kb on - strandat 22.424 kb on - strandat 22.424 kb on - strandat 22.427 kb on + strandat 22.428 kb on - strandat 22.525 kb on + strand, within CA264_00085at 22.562 kb on + strand, within CA264_00085at 22.562 kb on + strand, within CA264_00085at 22.563 kb on - strand, within CA264_00085at 22.563 kb on - strand, within CA264_00085at 22.606 kb on - strand, within CA264_00085at 22.618 kb on - strand, within CA264_00085at 22.625 kb on - strand, within CA264_00085at 22.768 kb on + strandat 22.772 kb on + strandat 22.772 kb on + strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.774 kb on + strandat 22.817 kb on - strandat 22.867 kb on + strandat 22.868 kb on - strandat 22.878 kb on + strandat 22.879 kb on - strandat 22.965 kb on + strand, within CA264_00090at 23.041 kb on + strand, within CA264_00090at 23.041 kb on + strand, within CA264_00090at 23.042 kb on - strand, within CA264_00090at 23.102 kb on + strand, within CA264_00090at 23.137 kb on - strand, within CA264_00090at 23.186 kb on + strand, within CA264_00090at 23.186 kb on + strand, within CA264_00090at 23.186 kb on + strand, within CA264_00090at 23.187 kb on - strand, within CA264_00090at 23.284 kb on + strand, within CA264_00090at 23.285 kb on - strand, within CA264_00090at 23.285 kb on - strand, within CA264_00090at 23.285 kb on - strand, within CA264_00090at 23.541 kb on + strand, within CA264_00090at 23.759 kb on - strand, within CA264_00090at 23.759 kb on - strand, within CA264_00090at 23.763 kb on + strand, within CA264_00090at 23.803 kb on + strand, within CA264_00090at 23.845 kb on + strand, within CA264_00090at 23.846 kb on - strand, within CA264_00090at 23.846 kb on - strand, within CA264_00090at 23.846 kb on - strand, within CA264_00090at 23.851 kb on + strand, within CA264_00090at 23.851 kb on + strand, within CA264_00090at 23.851 kb on + strand, within CA264_00090at 23.852 kb on - strand, within CA264_00090at 23.854 kb on + strand, within CA264_00090at 23.854 kb on + strand, within CA264_00090at 24.016 kb on + strand, within CA264_00090at 24.016 kb on + strand, within CA264_00090at 24.018 kb on + strand, within CA264_00090at 24.019 kb on - strand, within CA264_00090at 24.038 kb on + strand, within CA264_00090at 24.092 kb on + strand, within CA264_00090at 24.139 kb on + strand, within CA264_00090at 24.139 kb on + strand, within CA264_00090at 24.188 kb on - strand, within CA264_00090at 24.278 kb on - strand, within CA264_00090at 24.288 kb on + strand, within CA264_00090at 24.289 kb on - strand, within CA264_00090at 24.310 kb on + strand, within CA264_00090at 24.311 kb on - strand, within CA264_00090at 24.311 kb on - strand, within CA264_00090at 24.496 kb on - strand, within CA264_00090at 24.496 kb on - strand, within CA264_00090at 24.496 kb on - strand, within CA264_00090at 24.527 kb on + strand, within CA264_00090at 24.527 kb on + strand, within CA264_00090at 24.528 kb on - strand, within CA264_00090at 24.528 kb on - strand, within CA264_00090at 24.531 kb on + strand, within CA264_00090at 24.532 kb on - strand, within CA264_00090at 24.532 kb on - strand, within CA264_00090at 24.532 kb on - strand, within CA264_00090at 24.532 kb on - strand, within CA264_00090at 24.534 kb on - strand, within CA264_00090at 24.577 kb on - strand, within CA264_00090at 24.577 kb on - strand, within CA264_00090at 24.724 kb on - strand, within CA264_00090at 24.750 kb on - strand, within CA264_00090at 24.750 kb on - strand, within CA264_00090at 24.755 kb on - strand, within CA264_00090at 24.755 kb on - strand, within CA264_00090at 24.755 kb on - strand, within CA264_00090at 24.840 kb on + strand, within CA264_00090at 24.918 kb on - strand, within CA264_00090at 25.005 kb on + strand, within CA264_00090at 25.005 kb on + strand, within CA264_00090at 25.005 kb on + strand, within CA264_00090at 25.006 kb on - strand, within CA264_00090at 25.006 kb on - strand, within CA264_00090at 25.031 kb on + strand, within CA264_00090at 25.031 kb on + strand, within CA264_00090at 25.051 kb on - strand, within CA264_00090at 25.098 kb on - strand, within CA264_00090at 25.111 kb on + strandat 25.272 kb on - strandat 25.272 kb on - strandat 25.346 kb on + strandat 25.374 kb on - strandat 25.382 kb on - strandat 25.382 kb on - strandat 25.393 kb on - strandat 25.393 kb on - strandat 25.399 kb on - strandat 25.399 kb on - strandat 25.443 kb on + strand, within CA264_00095at 25.444 kb on - strand, within CA264_00095at 25.446 kb on + strand, within CA264_00095at 25.447 kb on - strand, within CA264_00095at 25.569 kb on + strand, within CA264_00095at 25.569 kb on + strand, within CA264_00095at 25.598 kb on + strand, within CA264_00095at 25.599 kb on - strand, within CA264_00095at 25.712 kb on - strand, within CA264_00095at 25.800 kb on - strandat 25.831 kb on - strandat 25.853 kb on + strandat 25.853 kb on + strandat 25.853 kb on + strandat 25.854 kb on - strandat 25.950 kb on + strandat 25.951 kb on - strandat 25.959 kb on + strandat 26.077 kb on - strandat 26.082 kb on + strandat 26.167 kb on - strandat 26.178 kb on - strandat 26.228 kb on - strand, within CA264_00100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.008 mg/ml
remove
21,654 + CA264_00080 0.61 -0.9
21,674 - CA264_00080 0.62 -0.5
21,689 - CA264_00080 0.63 +0.4
21,745 + CA264_00080 0.66 -0.1
21,813 - CA264_00080 0.70 -0.2
21,818 + CA264_00080 0.70 +0.3
21,819 - CA264_00080 0.70 -1.1
21,899 - CA264_00080 0.75 +1.9
21,942 + CA264_00080 0.78 -0.2
21,943 - CA264_00080 0.78 +0.4
22,013 + CA264_00080 0.82 -0.8
22,099 - CA264_00080 0.87 +2.4
22,205 + +0.7
22,222 + +1.4
22,328 - -0.0
22,375 - +0.4
22,423 + +0.0
22,423 + -1.4
22,424 - -0.4
22,424 - -0.3
22,424 - +0.0
22,424 - +1.1
22,427 + -0.7
22,428 - -3.2
22,525 + CA264_00085 0.39 +1.7
22,562 + CA264_00085 0.56 +0.9
22,562 + CA264_00085 0.56 +0.9
22,563 - CA264_00085 0.57 +0.2
22,563 - CA264_00085 0.57 -1.3
22,606 - CA264_00085 0.76 -0.1
22,618 - CA264_00085 0.82 +0.5
22,625 - CA264_00085 0.85 +0.4
22,768 + -0.3
22,772 + +0.7
22,772 + -0.8
22,773 - +0.7
22,773 - +0.3
22,773 - +0.1
22,773 - -0.6
22,773 - -0.7
22,773 - -0.2
22,774 + -0.2
22,817 - +0.6
22,867 + +0.6
22,868 - +0.1
22,878 + -0.6
22,879 - -0.1
22,965 + CA264_00090 0.11 +1.2
23,041 + CA264_00090 0.14 +0.2
23,041 + CA264_00090 0.14 -0.4
23,042 - CA264_00090 0.14 -0.9
23,102 + CA264_00090 0.16 -0.5
23,137 - CA264_00090 0.18 -0.8
23,186 + CA264_00090 0.20 -0.7
23,186 + CA264_00090 0.20 -0.3
23,186 + CA264_00090 0.20 +0.3
23,187 - CA264_00090 0.20 -0.0
23,284 + CA264_00090 0.23 -0.6
23,285 - CA264_00090 0.23 +1.0
23,285 - CA264_00090 0.23 +0.1
23,285 - CA264_00090 0.23 -0.6
23,541 + CA264_00090 0.33 +0.2
23,759 - CA264_00090 0.41 +1.3
23,759 - CA264_00090 0.41 -0.0
23,763 + CA264_00090 0.41 +3.0
23,803 + CA264_00090 0.42 +0.1
23,845 + CA264_00090 0.44 +0.4
23,846 - CA264_00090 0.44 -0.7
23,846 - CA264_00090 0.44 -0.3
23,846 - CA264_00090 0.44 +0.4
23,851 + CA264_00090 0.44 -1.1
23,851 + CA264_00090 0.44 +0.7
23,851 + CA264_00090 0.44 -0.7
23,852 - CA264_00090 0.44 +0.3
23,854 + CA264_00090 0.44 +0.3
23,854 + CA264_00090 0.44 +0.0
24,016 + CA264_00090 0.50 -1.3
24,016 + CA264_00090 0.50 +0.8
24,018 + CA264_00090 0.50 +0.4
24,019 - CA264_00090 0.50 -0.9
24,038 + CA264_00090 0.51 -0.2
24,092 + CA264_00090 0.53 +1.7
24,139 + CA264_00090 0.55 -0.3
24,139 + CA264_00090 0.55 +0.3
24,188 - CA264_00090 0.56 +0.7
24,278 - CA264_00090 0.60 -0.4
24,288 + CA264_00090 0.60 +0.3
24,289 - CA264_00090 0.60 -0.4
24,310 + CA264_00090 0.61 +2.2
24,311 - CA264_00090 0.61 -0.8
24,311 - CA264_00090 0.61 +0.9
24,496 - CA264_00090 0.68 +1.4
24,496 - CA264_00090 0.68 +0.6
24,496 - CA264_00090 0.68 +1.1
24,527 + CA264_00090 0.69 -0.2
24,527 + CA264_00090 0.69 -0.3
24,528 - CA264_00090 0.69 +0.1
24,528 - CA264_00090 0.69 +0.5
24,531 + CA264_00090 0.69 +0.1
24,532 - CA264_00090 0.69 -0.1
24,532 - CA264_00090 0.69 -1.2
24,532 - CA264_00090 0.69 -0.0
24,532 - CA264_00090 0.69 -0.3
24,534 - CA264_00090 0.69 -0.3
24,577 - CA264_00090 0.71 +0.2
24,577 - CA264_00090 0.71 +0.3
24,724 - CA264_00090 0.76 +0.6
24,750 - CA264_00090 0.77 -0.1
24,750 - CA264_00090 0.77 -0.1
24,755 - CA264_00090 0.77 +0.2
24,755 - CA264_00090 0.77 -0.1
24,755 - CA264_00090 0.77 +0.8
24,840 + CA264_00090 0.80 -0.2
24,918 - CA264_00090 0.83 -0.1
25,005 + CA264_00090 0.86 +0.8
25,005 + CA264_00090 0.86 -0.4
25,005 + CA264_00090 0.86 -1.4
25,006 - CA264_00090 0.86 +0.7
25,006 - CA264_00090 0.86 -0.5
25,031 + CA264_00090 0.87 -0.4
25,031 + CA264_00090 0.87 -0.4
25,051 - CA264_00090 0.88 -0.3
25,098 - CA264_00090 0.90 -1.1
25,111 + +0.0
25,272 - -1.2
25,272 - -0.2
25,346 + -0.2
25,374 - -0.1
25,382 - +0.7
25,382 - -0.1
25,393 - +0.5
25,393 - +0.5
25,399 - -0.2
25,399 - +1.3
25,443 + CA264_00095 0.13 +0.3
25,444 - CA264_00095 0.13 +0.3
25,446 + CA264_00095 0.14 -0.1
25,447 - CA264_00095 0.14 -0.2
25,569 + CA264_00095 0.46 -0.8
25,569 + CA264_00095 0.46 +1.0
25,598 + CA264_00095 0.53 +0.3
25,599 - CA264_00095 0.54 +1.0
25,712 - CA264_00095 0.83 +0.1
25,800 - +0.2
25,831 - +1.2
25,853 + -0.3
25,853 + +0.8
25,853 + +1.1
25,854 - -0.5
25,950 + +1.2
25,951 - -0.1
25,959 + +1.0
26,077 - +0.5
26,082 + -0.3
26,167 - +0.4
26,178 - +0.3
26,228 - CA264_00100 0.11 -0.4

Or see this region's nucleotide sequence