Strain Fitness in Agrobacterium fabrum C58 around Atu3801

Experiment: Choline chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3800 and Atu3801 are separated by 95 nucleotidesAtu3801 and Atu3802 overlap by 8 nucleotidesAtu3802 and Atu3803 overlap by 8 nucleotides Atu3800: Atu3800 - proline/glycine betaine ABC transporter substrate-binding protein, at 895,721 to 896,758 Atu3800 Atu3801: Atu3801 - proline/glycine betaine ABC transporter permease, at 896,854 to 897,711 Atu3801 Atu3802: Atu3802 - proline/glycine betaine ABC transporter ATPase, at 897,704 to 898,537 Atu3802 Atu3803: Atu3803 - histidine ammonia-lyase, at 898,530 to 900,032 Atu3803 Position (kb) 896 897 898Strain fitness (log2 ratio) -2 -1 0 1 2at 895.882 kb on + strand, within Atu3800at 895.899 kb on - strand, within Atu3800at 895.899 kb on - strand, within Atu3800at 895.927 kb on + strand, within Atu3800at 895.941 kb on + strand, within Atu3800at 895.941 kb on + strand, within Atu3800at 896.033 kb on + strand, within Atu3800at 896.046 kb on - strand, within Atu3800at 896.080 kb on - strand, within Atu3800at 896.082 kb on + strand, within Atu3800at 896.101 kb on + strand, within Atu3800at 896.101 kb on + strand, within Atu3800at 896.144 kb on + strand, within Atu3800at 896.144 kb on + strand, within Atu3800at 896.199 kb on - strand, within Atu3800at 896.199 kb on - strand, within Atu3800at 896.251 kb on - strand, within Atu3800at 896.258 kb on - strand, within Atu3800at 896.275 kb on + strand, within Atu3800at 896.275 kb on + strand, within Atu3800at 896.362 kb on + strand, within Atu3800at 896.362 kb on + strand, within Atu3800at 896.370 kb on - strand, within Atu3800at 896.459 kb on - strand, within Atu3800at 896.479 kb on - strand, within Atu3800at 896.530 kb on + strand, within Atu3800at 896.530 kb on + strand, within Atu3800at 896.537 kb on + strand, within Atu3800at 896.622 kb on - strand, within Atu3800at 896.632 kb on - strand, within Atu3800at 896.639 kb on - strand, within Atu3800at 896.686 kb on + strandat 896.700 kb on - strandat 896.724 kb on + strandat 896.760 kb on - strandat 896.797 kb on + strandat 896.802 kb on + strandat 896.805 kb on - strandat 896.843 kb on + strandat 896.851 kb on - strandat 896.912 kb on + strandat 896.930 kb on - strandat 897.009 kb on - strand, within Atu3801at 897.116 kb on + strand, within Atu3801at 897.137 kb on + strand, within Atu3801at 897.292 kb on + strand, within Atu3801at 897.298 kb on - strand, within Atu3801at 897.300 kb on - strand, within Atu3801at 897.309 kb on + strand, within Atu3801at 897.315 kb on + strand, within Atu3801at 897.403 kb on + strand, within Atu3801at 897.413 kb on - strand, within Atu3801at 897.442 kb on - strand, within Atu3801at 897.497 kb on - strand, within Atu3801at 897.522 kb on + strand, within Atu3801at 897.524 kb on + strand, within Atu3801at 897.530 kb on - strand, within Atu3801at 897.560 kb on + strand, within Atu3801at 897.560 kb on + strand, within Atu3801at 897.568 kb on - strand, within Atu3801at 897.612 kb on + strand, within Atu3801at 897.622 kb on + strand, within Atu3801at 897.671 kb on + strandat 897.761 kb on + strandat 897.766 kb on + strandat 897.766 kb on + strandat 897.766 kb on + strandat 897.773 kb on + strandat 897.781 kb on - strandat 897.876 kb on + strand, within Atu3802at 897.901 kb on + strand, within Atu3802at 897.974 kb on + strand, within Atu3802at 898.025 kb on + strand, within Atu3802at 898.026 kb on + strand, within Atu3802at 898.075 kb on - strand, within Atu3802at 898.075 kb on - strand, within Atu3802at 898.112 kb on - strand, within Atu3802at 898.126 kb on + strand, within Atu3802at 898.203 kb on + strand, within Atu3802at 898.203 kb on + strand, within Atu3802at 898.203 kb on + strand, within Atu3802at 898.264 kb on + strand, within Atu3802at 898.299 kb on + strand, within Atu3802at 898.321 kb on + strand, within Atu3802at 898.331 kb on + strand, within Atu3802at 898.331 kb on + strand, within Atu3802at 898.337 kb on + strand, within Atu3802at 898.342 kb on + strand, within Atu3802at 898.355 kb on - strand, within Atu3802at 898.462 kb on - strandat 898.462 kb on - strandat 898.540 kb on - strandat 898.586 kb on + strandat 898.600 kb on + strandat 898.608 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride (N)
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895,882 + Atu3800 0.16 -0.1
895,899 - Atu3800 0.17 +0.0
895,899 - Atu3800 0.17 +0.0
895,927 + Atu3800 0.20 -0.1
895,941 + Atu3800 0.21 +1.0
895,941 + Atu3800 0.21 -0.1
896,033 + Atu3800 0.30 -0.7
896,046 - Atu3800 0.31 +0.7
896,080 - Atu3800 0.35 +0.5
896,082 + Atu3800 0.35 -0.1
896,101 + Atu3800 0.37 +0.0
896,101 + Atu3800 0.37 -0.3
896,144 + Atu3800 0.41 -2.0
896,144 + Atu3800 0.41 +0.1
896,199 - Atu3800 0.46 -1.4
896,199 - Atu3800 0.46 -0.1
896,251 - Atu3800 0.51 -0.6
896,258 - Atu3800 0.52 +0.0
896,275 + Atu3800 0.53 -0.8
896,275 + Atu3800 0.53 -0.3
896,362 + Atu3800 0.62 -0.0
896,362 + Atu3800 0.62 -0.0
896,370 - Atu3800 0.63 +0.1
896,459 - Atu3800 0.71 +0.7
896,479 - Atu3800 0.73 -0.0
896,530 + Atu3800 0.78 -0.3
896,530 + Atu3800 0.78 -0.6
896,537 + Atu3800 0.79 +0.1
896,622 - Atu3800 0.87 +0.3
896,632 - Atu3800 0.88 +0.4
896,639 - Atu3800 0.88 +0.4
896,686 + +0.5
896,700 - -0.4
896,724 + -0.2
896,760 - -0.5
896,797 + -0.9
896,802 + +0.1
896,805 - -0.2
896,843 + +0.5
896,851 - +0.5
896,912 + -0.2
896,930 - -0.1
897,009 - Atu3801 0.18 -0.4
897,116 + Atu3801 0.31 +0.4
897,137 + Atu3801 0.33 +0.6
897,292 + Atu3801 0.51 +0.1
897,298 - Atu3801 0.52 +0.7
897,300 - Atu3801 0.52 +0.1
897,309 + Atu3801 0.53 +0.4
897,315 + Atu3801 0.54 +0.2
897,403 + Atu3801 0.64 -0.6
897,413 - Atu3801 0.65 -0.1
897,442 - Atu3801 0.69 +0.0
897,497 - Atu3801 0.75 -0.2
897,522 + Atu3801 0.78 +0.4
897,524 + Atu3801 0.78 +0.4
897,530 - Atu3801 0.79 -0.1
897,560 + Atu3801 0.82 +0.1
897,560 + Atu3801 0.82 -2.2
897,568 - Atu3801 0.83 -0.1
897,612 + Atu3801 0.88 +0.3
897,622 + Atu3801 0.90 +0.3
897,671 + +0.3
897,761 + -0.3
897,766 + -0.6
897,766 + -1.9
897,766 + +1.3
897,773 + -0.1
897,781 - +1.3
897,876 + Atu3802 0.21 -0.1
897,901 + Atu3802 0.24 +0.1
897,974 + Atu3802 0.32 +0.3
898,025 + Atu3802 0.38 +0.4
898,026 + Atu3802 0.39 +0.9
898,075 - Atu3802 0.44 -0.3
898,075 - Atu3802 0.44 +0.2
898,112 - Atu3802 0.49 -0.3
898,126 + Atu3802 0.51 +0.3
898,203 + Atu3802 0.60 -0.6
898,203 + Atu3802 0.60 +0.2
898,203 + Atu3802 0.60 +1.9
898,264 + Atu3802 0.67 +0.0
898,299 + Atu3802 0.71 +0.4
898,321 + Atu3802 0.74 -0.0
898,331 + Atu3802 0.75 -0.9
898,331 + Atu3802 0.75 +0.8
898,337 + Atu3802 0.76 +0.2
898,342 + Atu3802 0.76 +0.3
898,355 - Atu3802 0.78 +1.7
898,462 - +0.1
898,462 - +0.1
898,540 - +0.1
898,586 + +1.7
898,600 + +0.3
898,608 - -0.4

Or see this region's nucleotide sequence