Experiment: Choline chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0778 and Atu0779 are separated by 342 nucleotides Atu0779 and Atu0780 are separated by 100 nucleotides Atu0780 and Atu0781 are separated by 161 nucleotides Atu0781 and Atu0782 are separated by 106 nucleotides
Atu0778: Atu0778 - hypothetical protein, at 772,779 to 775,319
Atu0778
Atu0779: Atu0779 - peroxiredoxin, at 775,662 to 776,147
Atu0779
Atu0780: Atu0780 - hypothetical protein, at 776,248 to 777,096
Atu0780
Atu0781: Atu0781 - hypothetical protein, at 777,258 to 777,863
Atu0781
Atu0782: Atu0782 - hypothetical protein, at 777,970 to 778,161
Atu0782
Position (kb) 776
777
778 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 775.314 kb on + strand at 775.318 kb on + strand at 775.336 kb on + strand at 775.338 kb on + strand at 775.338 kb on + strand at 775.344 kb on - strand at 775.346 kb on - strand at 775.354 kb on + strand at 775.364 kb on + strand at 775.366 kb on + strand at 775.372 kb on - strand at 775.382 kb on - strand at 775.641 kb on + strand at 775.660 kb on + strand at 775.660 kb on + strand at 775.668 kb on - strand at 775.668 kb on - strand at 775.757 kb on + strand, within Atu0779 at 775.769 kb on + strand, within Atu0779 at 775.770 kb on - strand, within Atu0779 at 775.770 kb on - strand, within Atu0779 at 775.770 kb on - strand, within Atu0779 at 775.776 kb on - strand, within Atu0779 at 775.781 kb on + strand, within Atu0779 at 775.789 kb on - strand, within Atu0779 at 775.827 kb on + strand, within Atu0779 at 775.876 kb on + strand, within Atu0779 at 775.921 kb on - strand, within Atu0779 at 775.936 kb on - strand, within Atu0779 at 776.165 kb on - strand at 776.236 kb on + strand at 776.312 kb on - strand at 776.312 kb on - strand at 776.336 kb on + strand, within Atu0780 at 776.356 kb on - strand, within Atu0780 at 776.507 kb on - strand, within Atu0780 at 776.559 kb on - strand, within Atu0780 at 776.592 kb on - strand, within Atu0780 at 776.679 kb on - strand, within Atu0780 at 776.685 kb on + strand, within Atu0780 at 776.798 kb on + strand, within Atu0780 at 776.798 kb on + strand, within Atu0780 at 776.798 kb on + strand, within Atu0780 at 776.805 kb on - strand, within Atu0780 at 776.806 kb on - strand, within Atu0780 at 776.819 kb on - strand, within Atu0780 at 776.840 kb on + strand, within Atu0780 at 776.924 kb on + strand, within Atu0780 at 777.090 kb on + strand at 777.109 kb on + strand at 777.109 kb on + strand at 777.371 kb on - strand, within Atu0781 at 777.483 kb on - strand, within Atu0781 at 777.488 kb on + strand, within Atu0781 at 777.623 kb on + strand, within Atu0781 at 777.691 kb on - strand, within Atu0781 at 777.780 kb on + strand, within Atu0781 at 777.781 kb on + strand, within Atu0781 at 777.788 kb on - strand, within Atu0781 at 777.837 kb on - strand at 777.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride (N) remove 775,314 + -0.5 775,318 + -0.5 775,336 + +0.2 775,338 + +0.8 775,338 + +0.2 775,344 - +0.3 775,346 - -0.3 775,354 + +0.3 775,364 + +0.0 775,366 + +0.0 775,372 - -0.5 775,382 - +0.4 775,641 + +0.1 775,660 + -0.0 775,660 + +0.7 775,668 - -0.8 775,668 - -1.2 775,757 + Atu0779 0.20 +0.6 775,769 + Atu0779 0.22 +0.1 775,770 - Atu0779 0.22 +0.1 775,770 - Atu0779 0.22 -0.2 775,770 - Atu0779 0.22 -0.1 775,776 - Atu0779 0.23 -1.0 775,781 + Atu0779 0.24 -0.1 775,789 - Atu0779 0.26 +0.8 775,827 + Atu0779 0.34 +1.1 775,876 + Atu0779 0.44 +0.1 775,921 - Atu0779 0.53 -0.2 775,936 - Atu0779 0.56 +1.1 776,165 - -0.0 776,236 + -0.1 776,312 - +0.0 776,312 - -0.6 776,336 + Atu0780 0.10 +0.1 776,356 - Atu0780 0.13 +0.6 776,507 - Atu0780 0.31 +0.5 776,559 - Atu0780 0.37 +0.3 776,592 - Atu0780 0.41 +0.2 776,679 - Atu0780 0.51 +0.1 776,685 + Atu0780 0.51 +0.4 776,798 + Atu0780 0.65 +0.8 776,798 + Atu0780 0.65 -0.0 776,798 + Atu0780 0.65 +0.1 776,805 - Atu0780 0.66 +0.1 776,806 - Atu0780 0.66 +1.8 776,819 - Atu0780 0.67 -0.2 776,840 + Atu0780 0.70 +1.4 776,924 + Atu0780 0.80 +0.1 777,090 + +1.4 777,109 + +0.2 777,109 + +0.8 777,371 - Atu0781 0.19 +4.1 777,483 - Atu0781 0.37 +3.6 777,488 + Atu0781 0.38 +3.5 777,623 + Atu0781 0.60 +4.0 777,691 - Atu0781 0.71 +3.5 777,780 + Atu0781 0.86 +3.7 777,781 + Atu0781 0.86 +4.1 777,788 - Atu0781 0.87 +4.8 777,837 - +4.3 777,837 - +3.4
Or see this region's nucleotide sequence