Strain Fitness in Pseudomonas simiae WCS417 around PS417_04080

Experiment: Gly-Glu (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_04075 and PS417_04080 are separated by 304 nucleotidesPS417_04080 and PS417_04085 are separated by 258 nucleotides PS417_04075: PS417_04075 - peptide ABC transporter substrate-binding protein, at 914,462 to 916,066 _04075 PS417_04080: PS417_04080 - peptide ABC transporter substrate-binding protein, at 916,371 to 917,999 _04080 PS417_04085: PS417_04085 - peptide ABC transporter substrate-binding protein, at 918,258 to 919,859 _04085 Position (kb) 916 917 918Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 915.397 kb on - strand, within PS417_04075at 915.397 kb on - strand, within PS417_04075at 915.802 kb on - strand, within PS417_04075at 915.892 kb on - strand, within PS417_04075at 915.931 kb on - strandat 915.931 kb on - strandat 916.057 kb on + strandat 916.088 kb on + strandat 916.089 kb on - strandat 916.089 kb on - strandat 916.218 kb on + strandat 916.246 kb on - strandat 916.246 kb on - strandat 916.281 kb on - strandat 916.314 kb on + strandat 916.347 kb on - strandat 916.372 kb on + strandat 916.372 kb on + strandat 916.373 kb on - strandat 916.396 kb on + strandat 916.397 kb on - strandat 916.459 kb on + strandat 916.509 kb on - strandat 916.524 kb on - strandat 916.524 kb on - strandat 916.526 kb on - strandat 916.748 kb on - strand, within PS417_04080at 917.116 kb on + strand, within PS417_04080at 917.270 kb on + strand, within PS417_04080at 917.656 kb on - strand, within PS417_04080at 917.656 kb on - strand, within PS417_04080at 917.869 kb on + strandat 917.993 kb on + strandat 917.994 kb on - strandat 918.068 kb on - strandat 918.068 kb on - strandat 918.068 kb on - strandat 918.166 kb on - strandat 918.232 kb on + strandat 918.259 kb on + strandat 918.259 kb on + strandat 918.263 kb on + strandat 918.263 kb on + strandat 918.263 kb on + strandat 918.264 kb on - strandat 918.264 kb on - strandat 918.264 kb on - strandat 918.268 kb on - strandat 918.371 kb on + strandat 918.372 kb on - strandat 918.523 kb on + strand, within PS417_04085at 918.523 kb on + strand, within PS417_04085at 918.575 kb on - strand, within PS417_04085at 918.575 kb on - strand, within PS417_04085at 918.617 kb on - strand, within PS417_04085at 918.631 kb on + strand, within PS417_04085at 918.631 kb on + strand, within PS417_04085at 918.632 kb on - strand, within PS417_04085at 918.778 kb on - strand, within PS417_04085at 918.805 kb on + strandat 918.805 kb on + strand, within PS417_04085at 918.832 kb on + strand, within PS417_04085at 918.833 kb on - strand, within PS417_04085at 918.833 kb on - strand, within PS417_04085at 918.976 kb on + strand, within PS417_04085at 918.977 kb on - strand, within PS417_04085at 918.977 kb on - strand, within PS417_04085at 918.977 kb on - strand, within PS417_04085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
remove
915,397 - PS417_04075 0.58 -2.5
915,397 - PS417_04075 0.58 -2.1
915,802 - PS417_04075 0.83 -1.7
915,892 - PS417_04075 0.89 -3.0
915,931 - -3.3
915,931 - -1.1
916,057 + -3.8
916,088 + -2.3
916,089 - -0.1
916,089 - +1.4
916,218 + -3.7
916,246 - +0.5
916,246 - -2.7
916,281 - -0.2
916,314 + -2.7
916,347 - -0.8
916,372 + -3.4
916,372 + -2.5
916,373 - -1.2
916,396 + -1.0
916,397 - -0.6
916,459 + -3.6
916,509 - -3.0
916,524 - -3.5
916,524 - -1.4
916,526 - -3.4
916,748 - PS417_04080 0.23 -3.8
917,116 + PS417_04080 0.46 -1.3
917,270 + PS417_04080 0.55 -0.8
917,656 - PS417_04080 0.79 -3.7
917,656 - PS417_04080 0.79 -0.9
917,869 + -2.3
917,993 + -2.4
917,994 - -2.1
918,068 - -3.0
918,068 - +3.7
918,068 - -2.8
918,166 - -0.6
918,232 + -2.7
918,259 + -1.5
918,259 + -1.2
918,263 + +2.0
918,263 + -0.8
918,263 + -2.5
918,264 - -1.5
918,264 - -1.0
918,264 - -3.1
918,268 - -0.2
918,371 + -2.4
918,372 - -1.7
918,523 + PS417_04085 0.17 -1.0
918,523 + PS417_04085 0.17 -1.1
918,575 - PS417_04085 0.20 -2.1
918,575 - PS417_04085 0.20 -0.4
918,617 - PS417_04085 0.22 -0.6
918,631 + PS417_04085 0.23 +0.8
918,631 + PS417_04085 0.23 -1.2
918,632 - PS417_04085 0.23 -0.6
918,778 - PS417_04085 0.32 -2.1
918,805 + -0.2
918,805 + PS417_04085 0.34 +0.6
918,832 + PS417_04085 0.36 -0.2
918,833 - PS417_04085 0.36 -1.1
918,833 - PS417_04085 0.36 -0.5
918,976 + PS417_04085 0.45 -0.7
918,977 - PS417_04085 0.45 -2.4
918,977 - PS417_04085 0.45 +0.3
918,977 - PS417_04085 0.45 -0.3

Or see this region's nucleotide sequence