Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18390 and PS417_18395 are separated by 3 nucleotides PS417_18395 and PS417_18400 overlap by 4 nucleotides PS417_18400 and PS417_18405 are separated by 57 nucleotides
PS417_18390: PS417_18390 - LacI family transcriptional regulator, at 4,003,113 to 4,004,135
_18390
PS417_18395: PS417_18395 - D-ribose ABC transporter, permease component RbsC (from data) , at 4,004,139 to 4,005,116
_18395
PS417_18400: PS417_18400 - D-ribose ABC transporter, ATPase component RbsA (from data) , at 4,005,113 to 4,006,666
_18400
PS417_18405: PS417_18405 - D-ribose ABC transporter, substrate-binding component RbsB (from data) , at 4,006,724 to 4,007,680
_18405
Position (kb)
4005
4006
4007 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 4004.281 kb on - strand, within PS417_18395 at 4004.545 kb on - strand, within PS417_18395 at 4004.660 kb on - strand, within PS417_18395 at 4004.941 kb on - strand, within PS417_18395 at 4005.810 kb on + strand, within PS417_18400 at 4005.810 kb on + strand, within PS417_18400 at 4005.810 kb on + strand, within PS417_18400 at 4005.972 kb on + strand, within PS417_18400 at 4005.973 kb on - strand, within PS417_18400 at 4006.667 kb on - strand at 4007.249 kb on + strand, within PS417_18405
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 4,004,281 - PS417_18395 0.15 -1.5 4,004,545 - PS417_18395 0.42 -0.9 4,004,660 - PS417_18395 0.53 +3.0 4,004,941 - PS417_18395 0.82 -0.1 4,005,810 + PS417_18400 0.45 +4.0 4,005,810 + PS417_18400 0.45 +4.1 4,005,810 + PS417_18400 0.45 +4.1 4,005,972 + PS417_18400 0.55 +4.0 4,005,973 - PS417_18400 0.55 -1.7 4,006,667 - -0.8 4,007,249 + PS417_18405 0.55 +2.5
Or see this region's nucleotide sequence