Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0699

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0698 and Echvi_0699 are separated by 677 nucleotidesEchvi_0699 and Echvi_0700 are separated by 492 nucleotides Echvi_0698: Echvi_0698 - Transcriptional regulators, at 788,784 to 789,800 _0698 Echvi_0699: Echvi_0699 - Transposase and inactivated derivatives, at 790,478 to 791,467 _0699 Echvi_0700: Echvi_0700 - Predicted aminopeptidases, at 791,960 to 792,922 _0700 Position (kb) 790 791 792Strain fitness (log2 ratio) -1 0 1 2at 789.520 kb on + strand, within Echvi_0698at 789.617 kb on + strand, within Echvi_0698at 789.655 kb on + strand, within Echvi_0698at 789.750 kb on - strandat 789.750 kb on - strandat 789.750 kb on - strandat 789.782 kb on + strandat 789.827 kb on + strandat 789.827 kb on + strandat 789.829 kb on + strandat 789.829 kb on + strandat 789.830 kb on - strandat 789.901 kb on + strandat 789.901 kb on + strandat 789.951 kb on - strandat 789.983 kb on - strandat 790.017 kb on + strandat 790.018 kb on - strandat 790.116 kb on - strandat 790.168 kb on + strandat 790.186 kb on - strandat 790.186 kb on - strandat 790.186 kb on - strandat 790.202 kb on - strandat 791.600 kb on + strandat 791.646 kb on + strandat 791.647 kb on - strandat 791.647 kb on - strandat 791.691 kb on + strandat 791.759 kb on - strandat 791.759 kb on - strandat 791.814 kb on - strandat 791.835 kb on - strandat 791.874 kb on + strandat 791.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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789,520 + Echvi_0698 0.72 +0.3
789,617 + Echvi_0698 0.82 -0.2
789,655 + Echvi_0698 0.86 -0.4
789,750 - +0.1
789,750 - -0.7
789,750 - +0.2
789,782 + -1.1
789,827 + +2.2
789,827 + +1.1
789,829 + -0.5
789,829 + -0.1
789,830 - +0.3
789,901 + -1.2
789,901 + -1.5
789,951 - +0.1
789,983 - -0.5
790,017 + +1.0
790,018 - +0.8
790,116 - -0.2
790,168 + +0.1
790,186 - +0.8
790,186 - +0.6
790,186 - +0.1
790,202 - +0.2
791,600 + +1.6
791,646 + -0.9
791,647 - -0.7
791,647 - -0.4
791,691 + +0.6
791,759 - -0.4
791,759 - +0.2
791,814 - -1.2
791,835 - -0.5
791,874 + -0.6
791,953 + +1.2

Or see this region's nucleotide sequence