Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0665 and Echvi_0666 are separated by 98 nucleotides Echvi_0666 and Echvi_0667 are separated by 190 nucleotides Echvi_0667 and Echvi_0668 are separated by 42 nucleotides
Echvi_0665: Echvi_0665 - FOG: Transposase and inactivated derivatives, at 747,819 to 749,051
_0665
Echvi_0666: Echvi_0666 - hypothetical protein, at 749,150 to 749,275
_0666
Echvi_0667: Echvi_0667 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 749,466 to 750,095
_0667
Echvi_0668: Echvi_0668 - Geranylgeranyl pyrophosphate synthase, at 750,138 to 751,130
_0668
Position (kb) 749
750
751 Strain fitness (log2 ratio) -2
-1
0
1 at 749.374 kb on + strand at 749.374 kb on + strand at 749.467 kb on + strand at 749.535 kb on - strand, within Echvi_0667 at 749.538 kb on + strand, within Echvi_0667 at 749.623 kb on - strand, within Echvi_0667 at 749.623 kb on - strand, within Echvi_0667 at 749.640 kb on + strand, within Echvi_0667 at 749.642 kb on + strand, within Echvi_0667 at 749.642 kb on + strand, within Echvi_0667 at 749.742 kb on + strand, within Echvi_0667 at 749.763 kb on - strand, within Echvi_0667 at 749.763 kb on - strand, within Echvi_0667 at 749.870 kb on - strand, within Echvi_0667 at 749.904 kb on - strand, within Echvi_0667 at 749.968 kb on + strand, within Echvi_0667 at 749.969 kb on - strand, within Echvi_0667 at 749.986 kb on - strand, within Echvi_0667 at 749.999 kb on + strand, within Echvi_0667 at 750.000 kb on - strand, within Echvi_0667 at 750.040 kb on + strand at 750.040 kb on + strand at 750.066 kb on - strand at 750.087 kb on + strand at 750.097 kb on + strand at 750.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 749,374 + -2.5 749,374 + +0.4 749,467 + -0.3 749,535 - Echvi_0667 0.11 -0.0 749,538 + Echvi_0667 0.11 +0.0 749,623 - Echvi_0667 0.25 -0.2 749,623 - Echvi_0667 0.25 -0.1 749,640 + Echvi_0667 0.28 -0.1 749,642 + Echvi_0667 0.28 -1.5 749,642 + Echvi_0667 0.28 -1.8 749,742 + Echvi_0667 0.44 -0.2 749,763 - Echvi_0667 0.47 -0.7 749,763 - Echvi_0667 0.47 +0.6 749,870 - Echvi_0667 0.64 -0.4 749,904 - Echvi_0667 0.70 -0.6 749,968 + Echvi_0667 0.80 -1.2 749,969 - Echvi_0667 0.80 +0.1 749,986 - Echvi_0667 0.83 -0.9 749,999 + Echvi_0667 0.85 -1.6 750,000 - Echvi_0667 0.85 -1.2 750,040 + -1.2 750,040 + +0.8 750,066 - -0.4 750,087 + -0.1 750,097 + -0.4 750,121 + -0.2
Or see this region's nucleotide sequence