Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21415 and CA264_21420 are separated by 107 nucleotides CA264_21420 and CA264_21425 are separated by 112 nucleotides CA264_21425 and CA264_21430 are separated by 375 nucleotides
CA264_21415: CA264_21415 - IS256 family transposase, at 147,224 to 148,429
_21415
CA264_21420: CA264_21420 - hypothetical protein, at 148,537 to 148,746
_21420
CA264_21425: CA264_21425 - copper-translocating P-type ATPase, at 148,859 to 151,126
_21425
CA264_21430: CA264_21430 - DDE transposase, at 151,502 to 152,329
_21430
Position (kb) 148
149
150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2 at 147.948 kb on + strand, within CA264_21415 at 147.948 kb on + strand, within CA264_21415 at 148.045 kb on - strand, within CA264_21415 at 148.193 kb on + strand, within CA264_21415 at 148.229 kb on - strand, within CA264_21415 at 148.229 kb on - strand, within CA264_21415 at 148.341 kb on + strand at 148.341 kb on + strand at 148.342 kb on - strand at 148.342 kb on - strand at 148.501 kb on - strand at 148.505 kb on - strand at 148.508 kb on + strand at 148.542 kb on + strand at 148.554 kb on + strand at 148.571 kb on - strand, within CA264_21420 at 148.678 kb on - strand, within CA264_21420 at 148.691 kb on - strand, within CA264_21420 at 148.760 kb on + strand at 148.760 kb on + strand at 148.769 kb on + strand at 148.773 kb on + strand at 148.774 kb on - strand at 148.774 kb on - strand at 148.807 kb on - strand at 148.883 kb on + strand at 148.895 kb on - strand at 148.899 kb on - strand at 148.959 kb on + strand at 148.960 kb on - strand at 148.993 kb on + strand at 148.993 kb on + strand at 148.997 kb on + strand at 148.998 kb on - strand at 149.007 kb on + strand at 149.008 kb on - strand at 149.061 kb on - strand at 149.074 kb on + strand at 149.129 kb on + strand, within CA264_21425 at 149.129 kb on + strand, within CA264_21425 at 149.130 kb on - strand, within CA264_21425 at 149.130 kb on - strand, within CA264_21425 at 149.153 kb on + strand, within CA264_21425 at 149.154 kb on - strand, within CA264_21425 at 149.154 kb on - strand, within CA264_21425 at 149.154 kb on - strand, within CA264_21425 at 149.159 kb on + strand, within CA264_21425 at 149.159 kb on + strand, within CA264_21425 at 149.159 kb on + strand, within CA264_21425 at 149.160 kb on - strand, within CA264_21425 at 149.160 kb on - strand, within CA264_21425 at 149.213 kb on + strand, within CA264_21425 at 149.213 kb on + strand, within CA264_21425 at 149.216 kb on + strand, within CA264_21425 at 149.216 kb on + strand, within CA264_21425 at 149.217 kb on - strand, within CA264_21425 at 149.257 kb on + strand, within CA264_21425 at 149.281 kb on + strand, within CA264_21425 at 149.284 kb on - strand, within CA264_21425 at 149.291 kb on + strand, within CA264_21425 at 149.298 kb on - strand, within CA264_21425 at 149.349 kb on + strand, within CA264_21425 at 149.350 kb on - strand, within CA264_21425 at 149.350 kb on - strand, within CA264_21425 at 149.350 kb on - strand, within CA264_21425 at 149.359 kb on + strand, within CA264_21425 at 149.359 kb on + strand, within CA264_21425 at 149.360 kb on - strand, within CA264_21425 at 149.360 kb on - strand, within CA264_21425 at 149.424 kb on - strand, within CA264_21425 at 149.426 kb on + strand, within CA264_21425 at 149.432 kb on + strand, within CA264_21425 at 149.433 kb on - strand, within CA264_21425 at 149.440 kb on + strand, within CA264_21425 at 149.461 kb on + strand, within CA264_21425 at 149.522 kb on + strand, within CA264_21425 at 149.522 kb on + strand, within CA264_21425 at 149.523 kb on - strand, within CA264_21425 at 149.523 kb on - strand, within CA264_21425 at 149.538 kb on - strand, within CA264_21425 at 149.545 kb on + strand, within CA264_21425 at 149.545 kb on + strand, within CA264_21425 at 149.546 kb on - strand, within CA264_21425 at 149.551 kb on + strand, within CA264_21425 at 149.603 kb on + strand, within CA264_21425 at 149.604 kb on - strand, within CA264_21425 at 149.604 kb on - strand, within CA264_21425 at 149.636 kb on + strand, within CA264_21425 at 149.712 kb on - strand, within CA264_21425 at 149.712 kb on - strand, within CA264_21425 at 149.712 kb on - strand, within CA264_21425 at 149.760 kb on - strand, within CA264_21425 at 149.813 kb on - strand, within CA264_21425 at 149.828 kb on - strand, within CA264_21425 at 149.858 kb on - strand, within CA264_21425 at 149.858 kb on - strand, within CA264_21425 at 149.952 kb on - strand, within CA264_21425 at 150.207 kb on + strand, within CA264_21425 at 150.208 kb on - strand, within CA264_21425 at 150.208 kb on - strand, within CA264_21425 at 150.269 kb on + strand, within CA264_21425 at 150.270 kb on - strand, within CA264_21425 at 150.270 kb on - strand, within CA264_21425 at 150.273 kb on + strand, within CA264_21425 at 150.273 kb on + strand, within CA264_21425 at 150.519 kb on + strand, within CA264_21425 at 150.519 kb on + strand, within CA264_21425 at 150.520 kb on - strand, within CA264_21425 at 150.520 kb on - strand, within CA264_21425 at 150.572 kb on - strand, within CA264_21425 at 150.602 kb on - strand, within CA264_21425 at 150.611 kb on + strand, within CA264_21425 at 150.685 kb on - strand, within CA264_21425 at 150.776 kb on - strand, within CA264_21425 at 150.934 kb on + strand at 150.934 kb on + strand at 150.935 kb on - strand at 150.935 kb on - strand at 150.936 kb on + strand at 150.936 kb on + strand at 151.001 kb on + strand at 151.043 kb on - strand at 151.048 kb on + strand at 151.081 kb on + strand at 151.099 kb on + strand at 151.100 kb on - strand at 151.112 kb on + strand at 151.112 kb on + strand at 151.113 kb on - strand at 151.117 kb on + strand at 151.186 kb on + strand at 151.190 kb on - strand at 151.227 kb on - strand at 151.227 kb on - strand at 151.236 kb on + strand at 151.243 kb on + strand at 151.244 kb on - strand at 151.258 kb on + strand at 151.309 kb on + strand at 151.323 kb on + strand at 151.323 kb on + strand at 151.324 kb on - strand at 151.324 kb on - strand at 151.328 kb on - strand at 151.332 kb on + strand at 151.375 kb on + strand at 151.388 kb on - strand at 151.409 kb on + strand at 151.409 kb on + strand at 151.415 kb on - strand at 151.434 kb on + strand at 151.495 kb on + strand at 151.527 kb on + strand at 151.527 kb on + strand at 151.528 kb on - strand at 151.528 kb on - strand at 151.528 kb on - strand at 151.532 kb on - strand at 151.600 kb on - strand, within CA264_21430 at 151.603 kb on - strand, within CA264_21430 at 151.616 kb on + strand, within CA264_21430 at 151.617 kb on - strand, within CA264_21430 at 151.618 kb on + strand, within CA264_21430 at 151.618 kb on + strand, within CA264_21430 at 151.618 kb on + strand, within CA264_21430 at 151.619 kb on - strand, within CA264_21430 at 151.619 kb on - strand, within CA264_21430 at 151.619 kb on - strand, within CA264_21430 at 151.624 kb on + strand, within CA264_21430 at 151.624 kb on + strand, within CA264_21430 at 151.624 kb on + strand, within CA264_21430 at 151.700 kb on + strand, within CA264_21430 at 151.701 kb on - strand, within CA264_21430 at 151.704 kb on - strand, within CA264_21430 at 151.783 kb on + strand, within CA264_21430 at 151.798 kb on - strand, within CA264_21430 at 151.811 kb on - strand, within CA264_21430 at 151.909 kb on + strand, within CA264_21430 at 152.094 kb on + strand, within CA264_21430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 147,948 + CA264_21415 0.60 +0.1 147,948 + CA264_21415 0.60 +0.1 148,045 - CA264_21415 0.68 -0.9 148,193 + CA264_21415 0.80 +0.6 148,229 - CA264_21415 0.83 -0.6 148,229 - CA264_21415 0.83 -0.2 148,341 + -0.0 148,341 + -0.5 148,342 - +0.0 148,342 - +0.1 148,501 - -0.4 148,505 - +0.4 148,508 + +1.0 148,542 + +0.0 148,554 + -0.9 148,571 - CA264_21420 0.16 -0.4 148,678 - CA264_21420 0.67 +0.2 148,691 - CA264_21420 0.73 +0.5 148,760 + -1.5 148,760 + -1.7 148,769 + -0.4 148,773 + -0.2 148,774 - +0.3 148,774 - -1.2 148,807 - +0.1 148,883 + -0.3 148,895 - -0.7 148,899 - +0.4 148,959 + -0.0 148,960 - -0.3 148,993 + -0.6 148,993 + -0.3 148,997 + -0.7 148,998 - +0.4 149,007 + -0.7 149,008 - +0.6 149,061 - +0.1 149,074 + -0.1 149,129 + CA264_21425 0.12 +0.2 149,129 + CA264_21425 0.12 -1.7 149,130 - CA264_21425 0.12 -0.1 149,130 - CA264_21425 0.12 -0.7 149,153 + CA264_21425 0.13 -0.4 149,154 - CA264_21425 0.13 -1.0 149,154 - CA264_21425 0.13 +0.1 149,154 - CA264_21425 0.13 -0.7 149,159 + CA264_21425 0.13 -0.8 149,159 + CA264_21425 0.13 -0.3 149,159 + CA264_21425 0.13 -0.1 149,160 - CA264_21425 0.13 -0.9 149,160 - CA264_21425 0.13 -0.2 149,213 + CA264_21425 0.16 -0.7 149,213 + CA264_21425 0.16 -0.0 149,216 + CA264_21425 0.16 +1.8 149,216 + CA264_21425 0.16 +0.1 149,217 - CA264_21425 0.16 -1.0 149,257 + CA264_21425 0.18 -0.3 149,281 + CA264_21425 0.19 +0.7 149,284 - CA264_21425 0.19 +0.0 149,291 + CA264_21425 0.19 -1.5 149,298 - CA264_21425 0.19 -0.9 149,349 + CA264_21425 0.22 -1.6 149,350 - CA264_21425 0.22 +0.5 149,350 - CA264_21425 0.22 +0.8 149,350 - CA264_21425 0.22 +0.6 149,359 + CA264_21425 0.22 -1.3 149,359 + CA264_21425 0.22 -0.2 149,360 - CA264_21425 0.22 -0.3 149,360 - CA264_21425 0.22 +0.0 149,424 - CA264_21425 0.25 -0.6 149,426 + CA264_21425 0.25 +0.7 149,432 + CA264_21425 0.25 +0.1 149,433 - CA264_21425 0.25 -0.7 149,440 + CA264_21425 0.26 -0.3 149,461 + CA264_21425 0.27 -0.3 149,522 + CA264_21425 0.29 -0.8 149,522 + CA264_21425 0.29 -0.4 149,523 - CA264_21425 0.29 -0.6 149,523 - CA264_21425 0.29 -1.2 149,538 - CA264_21425 0.30 +0.5 149,545 + CA264_21425 0.30 +0.1 149,545 + CA264_21425 0.30 +0.4 149,546 - CA264_21425 0.30 -0.4 149,551 + CA264_21425 0.31 +0.5 149,603 + CA264_21425 0.33 -0.2 149,604 - CA264_21425 0.33 +0.0 149,604 - CA264_21425 0.33 +0.8 149,636 + CA264_21425 0.34 -0.2 149,712 - CA264_21425 0.38 -0.3 149,712 - CA264_21425 0.38 -1.7 149,712 - CA264_21425 0.38 +0.5 149,760 - CA264_21425 0.40 -0.1 149,813 - CA264_21425 0.42 +0.6 149,828 - CA264_21425 0.43 -0.2 149,858 - CA264_21425 0.44 -0.3 149,858 - CA264_21425 0.44 -0.9 149,952 - CA264_21425 0.48 +0.0 150,207 + CA264_21425 0.59 +0.3 150,208 - CA264_21425 0.59 -0.0 150,208 - CA264_21425 0.59 -0.7 150,269 + CA264_21425 0.62 +0.7 150,270 - CA264_21425 0.62 -0.3 150,270 - CA264_21425 0.62 -1.3 150,273 + CA264_21425 0.62 -0.4 150,273 + CA264_21425 0.62 -1.0 150,519 + CA264_21425 0.73 -0.4 150,519 + CA264_21425 0.73 -0.7 150,520 - CA264_21425 0.73 +0.0 150,520 - CA264_21425 0.73 -0.2 150,572 - CA264_21425 0.76 -0.5 150,602 - CA264_21425 0.77 -0.0 150,611 + CA264_21425 0.77 -0.1 150,685 - CA264_21425 0.81 -0.7 150,776 - CA264_21425 0.85 +0.0 150,934 + +0.0 150,934 + -0.1 150,935 - +1.3 150,935 - -0.1 150,936 + +0.3 150,936 + -0.4 151,001 + +0.1 151,043 - -0.2 151,048 + -0.2 151,081 + -0.1 151,099 + -0.2 151,100 - -0.5 151,112 + -0.8 151,112 + +0.1 151,113 - -0.6 151,117 + +1.0 151,186 + +0.6 151,190 - +0.1 151,227 - -0.3 151,227 - -0.0 151,236 + +0.8 151,243 + -0.4 151,244 - -0.0 151,258 + -0.3 151,309 + -1.4 151,323 + -0.3 151,323 + -0.5 151,324 - +0.6 151,324 - +0.8 151,328 - +0.9 151,332 + -0.1 151,375 + -0.3 151,388 - -0.2 151,409 + -0.2 151,409 + +0.5 151,415 - -0.4 151,434 + +0.1 151,495 + +0.0 151,527 + -0.8 151,527 + -2.4 151,528 - +0.6 151,528 - +0.7 151,528 - +0.3 151,532 - -0.0 151,600 - CA264_21430 0.12 +0.0 151,603 - CA264_21430 0.12 -0.3 151,616 + CA264_21430 0.14 -0.0 151,617 - CA264_21430 0.14 -0.3 151,618 + CA264_21430 0.14 -0.0 151,618 + CA264_21430 0.14 +0.5 151,618 + CA264_21430 0.14 -1.2 151,619 - CA264_21430 0.14 -0.1 151,619 - CA264_21430 0.14 +0.7 151,619 - CA264_21430 0.14 +0.1 151,624 + CA264_21430 0.15 -0.7 151,624 + CA264_21430 0.15 -0.5 151,624 + CA264_21430 0.15 +0.1 151,700 + CA264_21430 0.24 +0.4 151,701 - CA264_21430 0.24 -0.2 151,704 - CA264_21430 0.24 +0.3 151,783 + CA264_21430 0.34 +0.0 151,798 - CA264_21430 0.36 -0.6 151,811 - CA264_21430 0.37 -0.6 151,909 + CA264_21430 0.49 +0.1 152,094 + CA264_21430 0.71 -0.0
Or see this region's nucleotide sequence