Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17915

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17910 and CA264_17915 are separated by 23 nucleotidesCA264_17915 and CA264_17920 are separated by 21 nucleotidesCA264_17920 and CA264_17925 are separated by 62 nucleotides CA264_17910: CA264_17910 - dTDP-glucose 4,6-dehydratase, at 4,163,688 to 4,164,737 _17910 CA264_17915: CA264_17915 - LPS biosynthesis protein WbpP, at 4,164,761 to 4,165,786 _17915 CA264_17920: CA264_17920 - glucose-1-phosphate thymidylyltransferase, at 4,165,808 to 4,166,668 _17920 CA264_17925: CA264_17925 - chromate transporter, at 4,166,731 to 4,167,903 _17925 Position (kb) 4164 4165 4166Strain fitness (log2 ratio) -1 0 1 2at 4164.685 kb on + strandat 4164.709 kb on - strandat 4164.725 kb on + strandat 4164.758 kb on + strandat 4164.759 kb on - strandat 4164.760 kb on + strandat 4164.760 kb on + strandat 4164.869 kb on - strand, within CA264_17915at 4164.923 kb on - strand, within CA264_17915at 4164.991 kb on + strand, within CA264_17915at 4165.079 kb on - strand, within CA264_17915at 4165.262 kb on + strand, within CA264_17915at 4165.520 kb on + strand, within CA264_17915at 4165.698 kb on + strandat 4165.751 kb on - strandat 4165.785 kb on - strandat 4165.787 kb on + strandat 4165.804 kb on - strandat 4165.804 kb on - strandat 4165.805 kb on + strandat 4166.675 kb on - strandat 4166.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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4,164,685 + +0.2
4,164,709 - -0.8
4,164,725 + -1.4
4,164,758 + +0.6
4,164,759 - +0.2
4,164,760 + +0.1
4,164,760 + +0.0
4,164,869 - CA264_17915 0.11 +0.7
4,164,923 - CA264_17915 0.16 +0.8
4,164,991 + CA264_17915 0.22 +1.1
4,165,079 - CA264_17915 0.31 +0.9
4,165,262 + CA264_17915 0.49 +1.1
4,165,520 + CA264_17915 0.74 +1.9
4,165,698 + +1.3
4,165,751 - +1.2
4,165,785 - -0.4
4,165,787 + +0.2
4,165,804 - -1.5
4,165,804 - -0.8
4,165,805 + +0.9
4,166,675 - -0.4
4,166,678 - -1.1

Or see this region's nucleotide sequence