Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14355

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14350 and CA264_14355 are separated by 3 nucleotidesCA264_14355 and CA264_14360 are separated by 32 nucleotidesCA264_14360 and CA264_14365 are separated by 43 nucleotides CA264_14350: CA264_14350 - hemolysin, at 3,370,362 to 3,371,675 _14350 CA264_14355: CA264_14355 - hypothetical protein, at 3,371,679 to 3,372,134 _14355 CA264_14360: CA264_14360 - gamma carbonic anhydrase family protein, at 3,372,167 to 3,372,691 _14360 CA264_14365: CA264_14365 - radical SAM protein, at 3,372,735 to 3,373,733 _14365 Position (kb) 3371 3372 3373Strain fitness (log2 ratio) -2 -1 0 1at 3370.694 kb on + strand, within CA264_14350at 3370.695 kb on - strand, within CA264_14350at 3370.812 kb on - strand, within CA264_14350at 3370.870 kb on + strand, within CA264_14350at 3371.091 kb on - strand, within CA264_14350at 3371.118 kb on + strand, within CA264_14350at 3371.148 kb on - strand, within CA264_14350at 3371.195 kb on + strand, within CA264_14350at 3371.348 kb on + strand, within CA264_14350at 3371.351 kb on + strand, within CA264_14350at 3371.399 kb on - strand, within CA264_14350at 3371.437 kb on + strand, within CA264_14350at 3371.438 kb on - strand, within CA264_14350at 3371.534 kb on - strand, within CA264_14350at 3371.586 kb on + strandat 3371.586 kb on + strandat 3371.587 kb on - strandat 3371.769 kb on + strand, within CA264_14355at 3371.809 kb on - strand, within CA264_14355at 3371.813 kb on - strand, within CA264_14355at 3371.813 kb on - strand, within CA264_14355at 3371.849 kb on + strand, within CA264_14355at 3371.849 kb on + strand, within CA264_14355at 3371.850 kb on - strand, within CA264_14355at 3371.954 kb on + strand, within CA264_14355at 3371.954 kb on + strand, within CA264_14355at 3371.956 kb on + strand, within CA264_14355at 3371.957 kb on - strand, within CA264_14355at 3372.168 kb on + strandat 3372.169 kb on - strandat 3372.169 kb on - strandat 3372.202 kb on - strandat 3372.210 kb on + strandat 3372.211 kb on - strandat 3372.263 kb on + strand, within CA264_14360at 3372.346 kb on + strand, within CA264_14360at 3372.346 kb on + strand, within CA264_14360at 3372.347 kb on - strand, within CA264_14360at 3372.517 kb on + strand, within CA264_14360at 3372.518 kb on - strand, within CA264_14360at 3372.518 kb on - strand, within CA264_14360at 3372.680 kb on + strandat 3372.681 kb on - strandat 3372.683 kb on - strandat 3372.707 kb on - strandat 3372.725 kb on - strandat 3372.725 kb on - strandat 3372.729 kb on + strandat 3372.729 kb on + strandat 3372.736 kb on + strandat 3372.792 kb on - strandat 3372.827 kb on - strandat 3372.841 kb on - strandat 3372.862 kb on + strand, within CA264_14365at 3372.876 kb on - strand, within CA264_14365at 3372.876 kb on - strand, within CA264_14365at 3372.941 kb on - strand, within CA264_14365at 3372.950 kb on - strand, within CA264_14365at 3372.970 kb on + strand, within CA264_14365at 3373.025 kb on + strand, within CA264_14365at 3373.115 kb on - strandat 3373.116 kb on + strand, within CA264_14365at 3373.117 kb on - strand, within CA264_14365

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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3,370,694 + CA264_14350 0.25 -1.3
3,370,695 - CA264_14350 0.25 +1.0
3,370,812 - CA264_14350 0.34 -1.6
3,370,870 + CA264_14350 0.39 -2.2
3,371,091 - CA264_14350 0.55 -0.9
3,371,118 + CA264_14350 0.58 -0.2
3,371,148 - CA264_14350 0.60 -1.5
3,371,195 + CA264_14350 0.63 -1.0
3,371,348 + CA264_14350 0.75 +1.4
3,371,351 + CA264_14350 0.75 +0.1
3,371,399 - CA264_14350 0.79 -0.6
3,371,437 + CA264_14350 0.82 -1.6
3,371,438 - CA264_14350 0.82 -0.2
3,371,534 - CA264_14350 0.89 -0.4
3,371,586 + -2.3
3,371,586 + -0.9
3,371,587 - -0.4
3,371,769 + CA264_14355 0.20 +0.1
3,371,809 - CA264_14355 0.29 +0.3
3,371,813 - CA264_14355 0.29 -1.3
3,371,813 - CA264_14355 0.29 -1.2
3,371,849 + CA264_14355 0.37 +0.3
3,371,849 + CA264_14355 0.37 -0.3
3,371,850 - CA264_14355 0.38 -1.7
3,371,954 + CA264_14355 0.60 -0.7
3,371,954 + CA264_14355 0.60 +0.1
3,371,956 + CA264_14355 0.61 -0.2
3,371,957 - CA264_14355 0.61 -0.2
3,372,168 + +1.4
3,372,169 - -1.3
3,372,169 - +0.1
3,372,202 - -1.7
3,372,210 + -0.2
3,372,211 - -0.5
3,372,263 + CA264_14360 0.18 -0.4
3,372,346 + CA264_14360 0.34 -1.3
3,372,346 + CA264_14360 0.34 -0.5
3,372,347 - CA264_14360 0.34 -0.8
3,372,517 + CA264_14360 0.67 -0.7
3,372,518 - CA264_14360 0.67 +0.5
3,372,518 - CA264_14360 0.67 -0.9
3,372,680 + -0.0
3,372,681 - +0.0
3,372,683 - -0.5
3,372,707 - -1.3
3,372,725 - -0.3
3,372,725 - -0.2
3,372,729 + -0.6
3,372,729 + -0.5
3,372,736 + -0.4
3,372,792 - -1.2
3,372,827 - +0.6
3,372,841 - +0.1
3,372,862 + CA264_14365 0.13 +0.2
3,372,876 - CA264_14365 0.14 +0.6
3,372,876 - CA264_14365 0.14 +0.3
3,372,941 - CA264_14365 0.21 -1.2
3,372,950 - CA264_14365 0.22 +0.0
3,372,970 + CA264_14365 0.24 -0.3
3,373,025 + CA264_14365 0.29 -1.2
3,373,115 - +1.4
3,373,116 + CA264_14365 0.38 -0.1
3,373,117 - CA264_14365 0.38 -1.8

Or see this region's nucleotide sequence