Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13115

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13110 and CA264_13115 are separated by 271 nucleotidesCA264_13115 and CA264_13120 are separated by 163 nucleotidesCA264_13120 and CA264_13125 are separated by 100 nucleotides CA264_13110: CA264_13110 - 3-deoxy-7-phosphoheptulonate synthase, at 3,057,965 to 3,059,062 _13110 CA264_13115: CA264_13115 - proline dehydrogenase, at 3,059,334 to 3,060,521 _13115 CA264_13120: CA264_13120 - hypothetical protein, at 3,060,685 to 3,060,924 _13120 CA264_13125: CA264_13125 - RNA polymerase subunit sigma-70, at 3,061,025 to 3,061,597 _13125 Position (kb) 3059 3060 3061Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3058.525 kb on - strand, within CA264_13110at 3058.540 kb on - strand, within CA264_13110at 3058.559 kb on + strand, within CA264_13110at 3058.709 kb on + strand, within CA264_13110at 3058.914 kb on - strand, within CA264_13110at 3059.045 kb on - strandat 3059.083 kb on + strandat 3059.084 kb on - strandat 3059.084 kb on - strandat 3059.115 kb on - strandat 3059.173 kb on + strandat 3059.193 kb on + strandat 3059.209 kb on + strandat 3059.209 kb on + strandat 3059.224 kb on - strandat 3059.255 kb on - strandat 3059.324 kb on + strandat 3059.324 kb on + strandat 3059.325 kb on - strandat 3059.325 kb on - strandat 3059.327 kb on + strandat 3059.327 kb on + strandat 3059.349 kb on - strandat 3059.405 kb on - strandat 3059.405 kb on - strandat 3059.405 kb on - strandat 3059.405 kb on - strandat 3059.408 kb on + strandat 3059.409 kb on - strandat 3059.415 kb on + strandat 3059.416 kb on - strandat 3059.416 kb on - strandat 3059.416 kb on - strandat 3059.426 kb on + strandat 3059.426 kb on + strandat 3059.427 kb on - strandat 3059.596 kb on - strand, within CA264_13115at 3059.614 kb on + strand, within CA264_13115at 3059.729 kb on + strand, within CA264_13115at 3059.928 kb on + strand, within CA264_13115at 3059.929 kb on - strand, within CA264_13115at 3059.946 kb on + strand, within CA264_13115at 3059.949 kb on - strand, within CA264_13115at 3059.970 kb on + strand, within CA264_13115at 3059.970 kb on + strand, within CA264_13115at 3059.971 kb on - strand, within CA264_13115at 3059.971 kb on - strand, within CA264_13115at 3059.976 kb on - strand, within CA264_13115at 3059.979 kb on + strand, within CA264_13115at 3059.979 kb on + strand, within CA264_13115at 3059.979 kb on + strand, within CA264_13115at 3059.979 kb on + strand, within CA264_13115at 3059.980 kb on - strand, within CA264_13115at 3059.980 kb on - strand, within CA264_13115at 3059.980 kb on - strand, within CA264_13115at 3059.989 kb on - strand, within CA264_13115at 3060.051 kb on + strand, within CA264_13115at 3060.051 kb on + strand, within CA264_13115at 3060.081 kb on + strand, within CA264_13115at 3060.081 kb on + strand, within CA264_13115at 3060.121 kb on - strand, within CA264_13115at 3060.199 kb on + strand, within CA264_13115at 3060.200 kb on - strand, within CA264_13115at 3060.247 kb on - strand, within CA264_13115at 3060.304 kb on - strand, within CA264_13115at 3060.304 kb on - strand, within CA264_13115at 3060.342 kb on + strand, within CA264_13115at 3060.342 kb on + strand, within CA264_13115at 3060.343 kb on - strand, within CA264_13115at 3060.364 kb on - strand, within CA264_13115at 3060.378 kb on + strand, within CA264_13115at 3060.378 kb on + strand, within CA264_13115at 3060.378 kb on + strand, within CA264_13115at 3060.379 kb on - strand, within CA264_13115at 3060.654 kb on + strandat 3060.661 kb on + strandat 3060.677 kb on - strandat 3060.681 kb on - strandat 3060.851 kb on - strand, within CA264_13120at 3060.940 kb on - strandat 3061.062 kb on + strandat 3061.062 kb on + strandat 3061.062 kb on + strandat 3061.128 kb on + strand, within CA264_13125at 3061.139 kb on - strand, within CA264_13125at 3061.182 kb on - strand, within CA264_13125at 3061.216 kb on - strand, within CA264_13125at 3061.256 kb on + strand, within CA264_13125at 3061.262 kb on + strand, within CA264_13125at 3061.262 kb on + strand, within CA264_13125at 3061.340 kb on - strand, within CA264_13125at 3061.347 kb on + strand, within CA264_13125at 3061.458 kb on - strand, within CA264_13125at 3061.460 kb on + strand, within CA264_13125at 3061.460 kb on + strand, within CA264_13125at 3061.464 kb on + strand, within CA264_13125at 3061.464 kb on + strand, within CA264_13125at 3061.465 kb on - strand, within CA264_13125at 3061.506 kb on - strand, within CA264_13125

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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3,058,525 - CA264_13110 0.51 +0.5
3,058,540 - CA264_13110 0.52 -0.4
3,058,559 + CA264_13110 0.54 -3.2
3,058,709 + CA264_13110 0.68 -4.3
3,058,914 - CA264_13110 0.86 -1.7
3,059,045 - -0.8
3,059,083 + -3.2
3,059,084 - -1.1
3,059,084 - -1.3
3,059,115 - -1.1
3,059,173 + -1.2
3,059,193 + -4.1
3,059,209 + -1.3
3,059,209 + -4.0
3,059,224 - -1.3
3,059,255 - -3.7
3,059,324 + -0.8
3,059,324 + -0.3
3,059,325 - +0.8
3,059,325 - +0.3
3,059,327 + +0.3
3,059,327 + -0.4
3,059,349 - +0.7
3,059,405 - +0.8
3,059,405 - -0.4
3,059,405 - +0.6
3,059,405 - +0.6
3,059,408 + +0.6
3,059,409 - -0.0
3,059,415 + +0.2
3,059,416 - +0.7
3,059,416 - +0.1
3,059,416 - +0.4
3,059,426 + -0.0
3,059,426 + -0.0
3,059,427 - +0.3
3,059,596 - CA264_13115 0.22 +0.5
3,059,614 + CA264_13115 0.24 +1.0
3,059,729 + CA264_13115 0.33 -0.7
3,059,928 + CA264_13115 0.50 +0.9
3,059,929 - CA264_13115 0.50 +0.5
3,059,946 + CA264_13115 0.52 +1.4
3,059,949 - CA264_13115 0.52 +0.3
3,059,970 + CA264_13115 0.54 +0.8
3,059,970 + CA264_13115 0.54 +0.9
3,059,971 - CA264_13115 0.54 +0.9
3,059,971 - CA264_13115 0.54 +0.3
3,059,976 - CA264_13115 0.54 -0.2
3,059,979 + CA264_13115 0.54 +0.4
3,059,979 + CA264_13115 0.54 +0.3
3,059,979 + CA264_13115 0.54 +1.2
3,059,979 + CA264_13115 0.54 +1.2
3,059,980 - CA264_13115 0.54 +0.2
3,059,980 - CA264_13115 0.54 +0.4
3,059,980 - CA264_13115 0.54 +0.5
3,059,989 - CA264_13115 0.55 +1.3
3,060,051 + CA264_13115 0.60 +1.0
3,060,051 + CA264_13115 0.60 +0.4
3,060,081 + CA264_13115 0.63 +0.5
3,060,081 + CA264_13115 0.63 +0.5
3,060,121 - CA264_13115 0.66 -0.2
3,060,199 + CA264_13115 0.73 +1.4
3,060,200 - CA264_13115 0.73 +0.1
3,060,247 - CA264_13115 0.77 +0.2
3,060,304 - CA264_13115 0.82 +0.3
3,060,304 - CA264_13115 0.82 +0.9
3,060,342 + CA264_13115 0.85 -0.0
3,060,342 + CA264_13115 0.85 +1.0
3,060,343 - CA264_13115 0.85 +0.4
3,060,364 - CA264_13115 0.87 +0.6
3,060,378 + CA264_13115 0.88 +0.7
3,060,378 + CA264_13115 0.88 +0.6
3,060,378 + CA264_13115 0.88 +0.4
3,060,379 - CA264_13115 0.88 +0.9
3,060,654 + +0.1
3,060,661 + -0.7
3,060,677 - -0.7
3,060,681 - +0.0
3,060,851 - CA264_13120 0.69 +0.4
3,060,940 - +2.0
3,061,062 + -0.6
3,061,062 + -1.0
3,061,062 + -0.9
3,061,128 + CA264_13125 0.18 +0.1
3,061,139 - CA264_13125 0.20 -0.2
3,061,182 - CA264_13125 0.27 -1.4
3,061,216 - CA264_13125 0.33 -0.2
3,061,256 + CA264_13125 0.40 -0.2
3,061,262 + CA264_13125 0.41 +0.8
3,061,262 + CA264_13125 0.41 +0.5
3,061,340 - CA264_13125 0.55 -0.2
3,061,347 + CA264_13125 0.56 +0.6
3,061,458 - CA264_13125 0.76 -0.0
3,061,460 + CA264_13125 0.76 -1.1
3,061,460 + CA264_13125 0.76 +1.2
3,061,464 + CA264_13125 0.77 -0.5
3,061,464 + CA264_13125 0.77 -1.1
3,061,465 - CA264_13125 0.77 -0.9
3,061,506 - CA264_13125 0.84 -1.4

Or see this region's nucleotide sequence