Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04250

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04245 and CA264_04250 overlap by 19 nucleotidesCA264_04250 and CA264_04255 are separated by 16 nucleotidesCA264_04255 and CA264_04260 are separated by 238 nucleotides CA264_04245: CA264_04245 - NADH-quinone oxidoreductase subunit G, at 979,727 to 982,456 _04245 CA264_04250: CA264_04250 - NADH oxidoreductase (quinone) subunit F, at 982,438 to 983,739 _04250 CA264_04255: CA264_04255 - NADH-quinone oxidoreductase subunit E, at 983,756 to 984,220 _04255 CA264_04260: CA264_04260 - NADH-quinone oxidoreductase subunit C/D, at 984,459 to 986,207 _04260 Position (kb) 982 983 984Strain fitness (log2 ratio) -2 -1 0 1 2at 981.486 kb on + strand, within CA264_04245at 981.571 kb on + strand, within CA264_04245at 981.573 kb on + strand, within CA264_04245at 981.573 kb on + strand, within CA264_04245at 981.574 kb on - strand, within CA264_04245at 981.574 kb on - strand, within CA264_04245at 981.686 kb on + strand, within CA264_04245at 981.687 kb on - strand, within CA264_04245at 981.813 kb on + strand, within CA264_04245at 981.814 kb on - strand, within CA264_04245at 981.832 kb on + strand, within CA264_04245at 981.838 kb on + strand, within CA264_04245at 981.842 kb on + strand, within CA264_04245at 981.843 kb on - strand, within CA264_04245at 981.843 kb on - strand, within CA264_04245at 981.843 kb on - strand, within CA264_04245at 981.918 kb on + strand, within CA264_04245at 981.919 kb on - strand, within CA264_04245at 981.921 kb on - strand, within CA264_04245at 981.966 kb on + strand, within CA264_04245at 981.975 kb on + strand, within CA264_04245at 982.053 kb on + strand, within CA264_04245at 982.053 kb on + strand, within CA264_04245at 982.053 kb on + strand, within CA264_04245at 982.053 kb on + strand, within CA264_04245at 982.054 kb on - strand, within CA264_04245at 982.074 kb on + strand, within CA264_04245at 982.084 kb on - strand, within CA264_04245at 982.300 kb on - strandat 982.418 kb on + strandat 982.440 kb on - strandat 982.440 kb on - strandat 982.443 kb on + strandat 982.443 kb on + strandat 982.443 kb on + strandat 982.593 kb on - strand, within CA264_04250at 982.660 kb on + strand, within CA264_04250at 982.660 kb on + strand, within CA264_04250at 982.829 kb on + strand, within CA264_04250at 982.908 kb on - strand, within CA264_04250at 983.012 kb on + strand, within CA264_04250at 983.091 kb on + strand, within CA264_04250at 983.092 kb on - strand, within CA264_04250at 983.266 kb on - strand, within CA264_04250at 983.281 kb on + strand, within CA264_04250at 983.290 kb on - strand, within CA264_04250at 983.298 kb on - strand, within CA264_04250at 983.310 kb on - strand, within CA264_04250at 983.321 kb on - strand, within CA264_04250at 983.355 kb on - strand, within CA264_04250at 983.355 kb on - strand, within CA264_04250at 983.375 kb on + strand, within CA264_04250at 983.393 kb on - strand, within CA264_04250at 983.614 kb on + strandat 983.632 kb on - strandat 983.668 kb on + strandat 983.669 kb on - strandat 983.761 kb on + strandat 983.762 kb on - strandat 983.763 kb on + strandat 983.763 kb on + strandat 983.808 kb on + strand, within CA264_04255at 983.913 kb on - strand, within CA264_04255at 983.913 kb on - strand, within CA264_04255at 983.928 kb on + strand, within CA264_04255at 983.928 kb on + strand, within CA264_04255at 983.929 kb on - strand, within CA264_04255at 983.929 kb on - strand, within CA264_04255at 983.984 kb on + strand, within CA264_04255at 983.985 kb on - strand, within CA264_04255at 983.985 kb on - strand, within CA264_04255at 984.030 kb on + strand, within CA264_04255at 984.068 kb on - strand, within CA264_04255at 984.068 kb on - strand, within CA264_04255at 984.146 kb on + strand, within CA264_04255at 984.147 kb on - strand, within CA264_04255at 984.179 kb on + strandat 984.180 kb on - strandat 984.236 kb on - strandat 984.246 kb on + strandat 984.262 kb on + strandat 984.336 kb on - strandat 984.355 kb on + strandat 984.357 kb on + strandat 984.357 kb on + strandat 984.358 kb on - strandat 984.358 kb on - strandat 984.376 kb on + strandat 984.376 kb on + strandat 984.427 kb on + strandat 984.428 kb on - strandat 984.431 kb on - strandat 984.450 kb on + strandat 984.450 kb on + strandat 984.501 kb on + strandat 984.502 kb on - strandat 984.502 kb on - strandat 984.504 kb on - strandat 984.537 kb on + strandat 984.538 kb on - strandat 984.541 kb on + strandat 984.542 kb on - strandat 984.623 kb on - strandat 984.625 kb on + strandat 984.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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981,486 + CA264_04245 0.64 +0.3
981,571 + CA264_04245 0.68 +1.7
981,573 + CA264_04245 0.68 +0.3
981,573 + CA264_04245 0.68 +0.2
981,574 - CA264_04245 0.68 +0.5
981,574 - CA264_04245 0.68 +0.6
981,686 + CA264_04245 0.72 -0.1
981,687 - CA264_04245 0.72 -0.3
981,813 + CA264_04245 0.76 +0.3
981,814 - CA264_04245 0.76 +1.2
981,832 + CA264_04245 0.77 +0.8
981,838 + CA264_04245 0.77 -0.2
981,842 + CA264_04245 0.77 +1.9
981,843 - CA264_04245 0.78 +0.7
981,843 - CA264_04245 0.78 +0.6
981,843 - CA264_04245 0.78 +0.4
981,918 + CA264_04245 0.80 +0.4
981,919 - CA264_04245 0.80 -0.2
981,921 - CA264_04245 0.80 -0.1
981,966 + CA264_04245 0.82 +0.2
981,975 + CA264_04245 0.82 -1.9
982,053 + CA264_04245 0.85 -0.8
982,053 + CA264_04245 0.85 +0.3
982,053 + CA264_04245 0.85 -0.2
982,053 + CA264_04245 0.85 +0.1
982,054 - CA264_04245 0.85 +0.1
982,074 + CA264_04245 0.86 -0.4
982,084 - CA264_04245 0.86 -0.2
982,300 - -0.2
982,418 + +0.8
982,440 - +0.4
982,440 - -0.6
982,443 + +0.3
982,443 + -0.0
982,443 + +0.8
982,593 - CA264_04250 0.12 -0.2
982,660 + CA264_04250 0.17 -0.2
982,660 + CA264_04250 0.17 -0.1
982,829 + CA264_04250 0.30 -0.4
982,908 - CA264_04250 0.36 -0.1
983,012 + CA264_04250 0.44 -1.1
983,091 + CA264_04250 0.50 +1.3
983,092 - CA264_04250 0.50 +1.4
983,266 - CA264_04250 0.64 +0.1
983,281 + CA264_04250 0.65 +0.4
983,290 - CA264_04250 0.65 +0.9
983,298 - CA264_04250 0.66 -1.0
983,310 - CA264_04250 0.67 -0.3
983,321 - CA264_04250 0.68 -0.1
983,355 - CA264_04250 0.70 +0.7
983,355 - CA264_04250 0.70 -0.0
983,375 + CA264_04250 0.72 +0.4
983,393 - CA264_04250 0.73 +0.1
983,614 + -0.3
983,632 - +0.7
983,668 + +1.0
983,669 - -0.1
983,761 + -0.5
983,762 - -0.3
983,763 + +0.3
983,763 + -0.2
983,808 + CA264_04255 0.11 -0.7
983,913 - CA264_04255 0.34 -0.3
983,913 - CA264_04255 0.34 -0.8
983,928 + CA264_04255 0.37 +0.4
983,928 + CA264_04255 0.37 +0.1
983,929 - CA264_04255 0.37 +0.1
983,929 - CA264_04255 0.37 -1.2
983,984 + CA264_04255 0.49 -0.5
983,985 - CA264_04255 0.49 -0.6
983,985 - CA264_04255 0.49 -0.5
984,030 + CA264_04255 0.59 +0.0
984,068 - CA264_04255 0.67 +0.1
984,068 - CA264_04255 0.67 -0.4
984,146 + CA264_04255 0.84 -0.2
984,147 - CA264_04255 0.84 +0.5
984,179 + -0.9
984,180 - -0.3
984,236 - +0.4
984,246 + +1.4
984,262 + -1.8
984,336 - +0.3
984,355 + +0.2
984,357 + +0.3
984,357 + -0.2
984,358 - -0.1
984,358 - -0.6
984,376 + -0.7
984,376 + +0.1
984,427 + +0.2
984,428 - -0.2
984,431 - -0.3
984,450 + -0.2
984,450 + +0.4
984,501 + -0.0
984,502 - -0.4
984,502 - -0.5
984,504 - +0.2
984,537 + +0.6
984,538 - -0.3
984,541 + -0.3
984,542 - -0.1
984,623 - +0.8
984,625 + +0.0
984,626 - +0.1

Or see this region's nucleotide sequence