Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03855 and CA264_03860 are separated by 6 nucleotides CA264_03860 and CA264_03865 are separated by 6 nucleotides CA264_03865 and CA264_03870 are separated by 401 nucleotides CA264_03870 and CA264_03875 are separated by 3 nucleotides
CA264_03855: CA264_03855 - magnesium transporter, at 899,363 to 900,715
_03855
CA264_03860: CA264_03860 - hypothetical protein, at 900,722 to 901,252
_03860
CA264_03865: CA264_03865 - phosphoglycerate dehydrogenase, at 901,259 to 902,215
_03865
CA264_03870: CA264_03870 - transcription elongation factor GreA, at 902,617 to 903,090
_03870
CA264_03875: CA264_03875 - HIT family protein, at 903,094 to 903,495
_03875
Position (kb)
901
902
903 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 900.351 kb on + strand, within CA264_03855 at 900.352 kb on - strand, within CA264_03855 at 900.352 kb on - strand, within CA264_03855 at 900.497 kb on + strand, within CA264_03855 at 900.498 kb on - strand, within CA264_03855 at 900.617 kb on - strand at 900.643 kb on + strand at 900.644 kb on - strand at 900.646 kb on + strand at 900.680 kb on + strand at 900.751 kb on + strand at 900.751 kb on + strand at 900.754 kb on + strand at 900.755 kb on - strand at 900.798 kb on + strand, within CA264_03860 at 900.819 kb on + strand, within CA264_03860 at 900.820 kb on - strand, within CA264_03860 at 900.825 kb on + strand, within CA264_03860 at 900.825 kb on + strand, within CA264_03860 at 900.825 kb on + strand, within CA264_03860 at 900.826 kb on - strand, within CA264_03860 at 900.826 kb on - strand, within CA264_03860 at 900.826 kb on - strand, within CA264_03860 at 900.826 kb on - strand, within CA264_03860 at 900.828 kb on + strand, within CA264_03860 at 900.829 kb on - strand, within CA264_03860 at 900.829 kb on - strand, within CA264_03860 at 900.846 kb on - strand, within CA264_03860 at 900.884 kb on + strand, within CA264_03860 at 900.885 kb on - strand, within CA264_03860 at 900.899 kb on + strand, within CA264_03860 at 900.900 kb on - strand, within CA264_03860 at 900.903 kb on + strand, within CA264_03860 at 900.904 kb on - strand, within CA264_03860 at 900.904 kb on - strand, within CA264_03860 at 900.904 kb on - strand, within CA264_03860 at 900.904 kb on - strand, within CA264_03860 at 900.907 kb on + strand, within CA264_03860 at 900.907 kb on + strand, within CA264_03860 at 900.907 kb on + strand, within CA264_03860 at 900.907 kb on + strand, within CA264_03860 at 900.908 kb on - strand, within CA264_03860 at 900.944 kb on + strand, within CA264_03860 at 900.945 kb on - strand, within CA264_03860 at 901.005 kb on + strand, within CA264_03860 at 901.005 kb on + strand, within CA264_03860 at 901.027 kb on + strand, within CA264_03860 at 901.028 kb on - strand, within CA264_03860 at 901.061 kb on + strand, within CA264_03860 at 901.061 kb on + strand, within CA264_03860 at 901.061 kb on + strand, within CA264_03860 at 901.130 kb on + strand, within CA264_03860 at 901.131 kb on - strand, within CA264_03860 at 901.218 kb on + strand at 901.219 kb on - strand at 901.223 kb on + strand at 901.223 kb on + strand at 901.224 kb on - strand at 901.224 kb on - strand at 901.224 kb on - strand at 901.225 kb on + strand at 901.225 kb on + strand at 901.225 kb on + strand at 901.246 kb on - strand at 902.193 kb on + strand at 902.213 kb on + strand at 902.213 kb on + strand at 902.213 kb on + strand at 902.214 kb on - strand at 902.297 kb on - strand at 902.387 kb on - strand at 902.471 kb on + strand at 902.471 kb on + strand at 902.472 kb on - strand at 902.472 kb on - strand at 902.472 kb on - strand at 902.472 kb on - strand at 902.477 kb on - strand at 902.478 kb on + strand at 902.479 kb on - strand at 902.494 kb on + strand at 902.494 kb on + strand at 902.494 kb on + strand at 902.495 kb on - strand at 902.495 kb on - strand at 902.499 kb on - strand at 902.499 kb on - strand at 902.501 kb on - strand at 902.540 kb on + strand at 902.616 kb on + strand at 902.617 kb on - strand at 902.632 kb on + strand at 902.635 kb on + strand at 902.635 kb on + strand at 902.636 kb on - strand at 902.762 kb on - strand, within CA264_03870 at 902.930 kb on - strand, within CA264_03870 at 902.930 kb on - strand, within CA264_03870 at 902.931 kb on + strand, within CA264_03870 at 903.094 kb on - strand at 903.122 kb on + strand at 903.150 kb on - strand, within CA264_03875 at 903.150 kb on - strand, within CA264_03875
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 900,351 + CA264_03855 0.73 -0.9 900,352 - CA264_03855 0.73 +1.1 900,352 - CA264_03855 0.73 +0.2 900,497 + CA264_03855 0.84 -0.4 900,498 - CA264_03855 0.84 +0.1 900,617 - +0.0 900,643 + -0.1 900,644 - -0.0 900,646 + -0.6 900,680 + +0.3 900,751 + +0.1 900,751 + -1.3 900,754 + -0.8 900,755 - -1.5 900,798 + CA264_03860 0.14 -0.1 900,819 + CA264_03860 0.18 -1.9 900,820 - CA264_03860 0.18 -0.1 900,825 + CA264_03860 0.19 -0.5 900,825 + CA264_03860 0.19 -0.6 900,825 + CA264_03860 0.19 -0.8 900,826 - CA264_03860 0.20 -0.3 900,826 - CA264_03860 0.20 +0.2 900,826 - CA264_03860 0.20 +0.1 900,826 - CA264_03860 0.20 -0.7 900,828 + CA264_03860 0.20 -1.1 900,829 - CA264_03860 0.20 +0.3 900,829 - CA264_03860 0.20 -0.3 900,846 - CA264_03860 0.23 -0.2 900,884 + CA264_03860 0.31 -0.6 900,885 - CA264_03860 0.31 -0.7 900,899 + CA264_03860 0.33 -0.7 900,900 - CA264_03860 0.34 -0.5 900,903 + CA264_03860 0.34 -1.2 900,904 - CA264_03860 0.34 -0.7 900,904 - CA264_03860 0.34 -1.7 900,904 - CA264_03860 0.34 +0.1 900,904 - CA264_03860 0.34 -0.6 900,907 + CA264_03860 0.35 -0.7 900,907 + CA264_03860 0.35 -0.1 900,907 + CA264_03860 0.35 -1.0 900,907 + CA264_03860 0.35 -0.9 900,908 - CA264_03860 0.35 -0.8 900,944 + CA264_03860 0.42 +0.4 900,945 - CA264_03860 0.42 -0.6 901,005 + CA264_03860 0.53 -0.8 901,005 + CA264_03860 0.53 -0.3 901,027 + CA264_03860 0.57 -1.1 901,028 - CA264_03860 0.58 -0.5 901,061 + CA264_03860 0.64 -0.7 901,061 + CA264_03860 0.64 -1.9 901,061 + CA264_03860 0.64 -0.6 901,130 + CA264_03860 0.77 -1.8 901,131 - CA264_03860 0.77 -0.3 901,218 + +0.5 901,219 - -0.1 901,223 + -1.2 901,223 + +0.8 901,224 - +0.6 901,224 - +0.6 901,224 - -0.3 901,225 + -0.6 901,225 + -1.0 901,225 + +0.5 901,246 - +0.9 902,193 + -0.7 902,213 + -1.3 902,213 + +0.7 902,213 + -0.5 902,214 - -0.8 902,297 - -0.6 902,387 - -0.2 902,471 + -1.2 902,471 + -1.2 902,472 - -1.4 902,472 - -0.8 902,472 - -0.5 902,472 - -0.2 902,477 - +3.4 902,478 + -1.2 902,479 - +0.1 902,494 + -0.1 902,494 + +0.1 902,494 + -2.2 902,495 - -0.4 902,495 - -0.5 902,499 - -0.5 902,499 - -0.6 902,501 - +0.4 902,540 + -0.7 902,616 + +0.7 902,617 - +0.1 902,632 + +1.5 902,635 + +0.7 902,635 + +1.6 902,636 - +1.4 902,762 - CA264_03870 0.31 +1.7 902,930 - CA264_03870 0.66 +1.3 902,930 - CA264_03870 0.66 +0.6 902,931 + CA264_03870 0.66 +1.8 903,094 - -1.0 903,122 + +1.6 903,150 - CA264_03875 0.14 +1.2 903,150 - CA264_03875 0.14 -0.1
Or see this region's nucleotide sequence