Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03170 and CA264_03175 are separated by 189 nucleotides CA264_03175 and CA264_03180 are separated by 37 nucleotides
CA264_03170: CA264_03170 - hypothetical protein, at 740,880 to 741,110
_03170
CA264_03175: CA264_03175 - acriflavin resistance protein, at 741,300 to 744,485
_03175
CA264_03180: CA264_03180 - efflux transporter periplasmic adaptor subunit, at 744,523 to 745,575
_03180
Position (kb) 741
742
743
744
745 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 740.335 kb on + strand at 740.342 kb on + strand at 740.343 kb on - strand at 740.423 kb on + strand at 740.424 kb on - strand at 740.456 kb on - strand at 740.518 kb on + strand at 740.518 kb on + strand at 740.519 kb on - strand at 740.519 kb on - strand at 740.520 kb on + strand at 740.523 kb on + strand at 740.535 kb on - strand at 740.541 kb on + strand at 740.698 kb on - strand at 740.710 kb on - strand at 740.898 kb on - strand at 740.939 kb on - strand, within CA264_03170 at 740.971 kb on + strand, within CA264_03170 at 741.066 kb on + strand, within CA264_03170 at 741.119 kb on + strand at 741.119 kb on + strand at 741.120 kb on - strand at 741.120 kb on - strand at 741.122 kb on + strand at 741.122 kb on + strand at 741.122 kb on + strand at 741.129 kb on + strand at 741.129 kb on + strand at 741.130 kb on - strand at 741.131 kb on + strand at 741.134 kb on + strand at 741.134 kb on + strand at 741.135 kb on - strand at 741.135 kb on - strand at 741.154 kb on - strand at 741.154 kb on - strand at 741.161 kb on + strand at 741.172 kb on + strand at 741.172 kb on + strand at 741.190 kb on + strand at 741.225 kb on - strand at 741.270 kb on + strand at 741.274 kb on + strand at 741.301 kb on + strand at 741.302 kb on - strand at 741.302 kb on - strand at 741.304 kb on + strand at 741.304 kb on + strand at 741.304 kb on + strand at 741.358 kb on - strand at 741.358 kb on - strand at 741.358 kb on - strand at 741.368 kb on + strand at 741.387 kb on + strand at 741.387 kb on + strand at 741.440 kb on - strand at 741.442 kb on + strand at 741.442 kb on + strand at 741.609 kb on + strand at 741.616 kb on - strand at 741.671 kb on + strand, within CA264_03175 at 741.679 kb on - strand, within CA264_03175 at 741.725 kb on + strand, within CA264_03175 at 741.725 kb on + strand, within CA264_03175 at 741.733 kb on - strand, within CA264_03175 at 741.733 kb on - strand, within CA264_03175 at 741.826 kb on + strand, within CA264_03175 at 741.832 kb on + strand, within CA264_03175 at 741.832 kb on + strand, within CA264_03175 at 741.832 kb on + strand, within CA264_03175 at 741.832 kb on + strand, within CA264_03175 at 741.832 kb on + strand, within CA264_03175 at 741.832 kb on + strand, within CA264_03175 at 741.832 kb on + strand, within CA264_03175 at 741.833 kb on + strand, within CA264_03175 at 741.833 kb on - strand, within CA264_03175 at 741.833 kb on - strand, within CA264_03175 at 741.833 kb on - strand, within CA264_03175 at 741.833 kb on - strand, within CA264_03175 at 741.833 kb on - strand, within CA264_03175 at 741.836 kb on + strand, within CA264_03175 at 741.837 kb on - strand, within CA264_03175 at 741.837 kb on - strand, within CA264_03175 at 741.842 kb on - strand, within CA264_03175 at 741.903 kb on - strand, within CA264_03175 at 741.940 kb on + strand, within CA264_03175 at 741.940 kb on + strand, within CA264_03175 at 741.948 kb on - strand, within CA264_03175 at 741.975 kb on - strand, within CA264_03175 at 742.037 kb on + strand, within CA264_03175 at 742.076 kb on + strand, within CA264_03175 at 742.076 kb on + strand, within CA264_03175 at 742.077 kb on - strand, within CA264_03175 at 742.077 kb on - strand, within CA264_03175 at 742.122 kb on + strand, within CA264_03175 at 742.139 kb on + strand, within CA264_03175 at 742.139 kb on + strand, within CA264_03175 at 742.157 kb on + strand, within CA264_03175 at 742.213 kb on + strand, within CA264_03175 at 742.213 kb on + strand, within CA264_03175 at 742.214 kb on - strand, within CA264_03175 at 742.271 kb on + strand, within CA264_03175 at 742.350 kb on - strand, within CA264_03175 at 742.389 kb on + strand, within CA264_03175 at 742.411 kb on - strand, within CA264_03175 at 742.411 kb on - strand, within CA264_03175 at 742.411 kb on - strand, within CA264_03175 at 742.492 kb on - strand, within CA264_03175 at 742.496 kb on + strand, within CA264_03175 at 742.496 kb on + strand, within CA264_03175 at 742.497 kb on - strand, within CA264_03175 at 742.500 kb on + strand, within CA264_03175 at 742.500 kb on + strand, within CA264_03175 at 742.521 kb on - strand, within CA264_03175 at 742.521 kb on - strand, within CA264_03175 at 742.575 kb on - strand, within CA264_03175 at 742.577 kb on + strand, within CA264_03175 at 742.603 kb on - strand, within CA264_03175 at 742.603 kb on - strand, within CA264_03175 at 742.630 kb on + strand, within CA264_03175 at 742.630 kb on + strand, within CA264_03175 at 742.631 kb on - strand, within CA264_03175 at 742.667 kb on + strand, within CA264_03175 at 742.671 kb on + strand, within CA264_03175 at 742.672 kb on - strand, within CA264_03175 at 742.672 kb on - strand, within CA264_03175 at 742.692 kb on + strand, within CA264_03175 at 742.692 kb on + strand, within CA264_03175 at 742.723 kb on - strand, within CA264_03175 at 742.752 kb on + strand, within CA264_03175 at 742.767 kb on - strand, within CA264_03175 at 742.782 kb on + strand, within CA264_03175 at 742.783 kb on - strand, within CA264_03175 at 742.852 kb on - strand, within CA264_03175 at 742.971 kb on + strand, within CA264_03175 at 742.972 kb on - strand, within CA264_03175 at 743.049 kb on - strand, within CA264_03175 at 743.061 kb on + strand, within CA264_03175 at 743.075 kb on + strand, within CA264_03175 at 743.076 kb on - strand, within CA264_03175 at 743.081 kb on + strand, within CA264_03175 at 743.081 kb on + strand, within CA264_03175 at 743.081 kb on + strand, within CA264_03175 at 743.082 kb on - strand, within CA264_03175 at 743.082 kb on - strand, within CA264_03175 at 743.085 kb on + strand, within CA264_03175 at 743.086 kb on - strand, within CA264_03175 at 743.129 kb on + strand, within CA264_03175 at 743.163 kb on + strand, within CA264_03175 at 743.213 kb on - strand, within CA264_03175 at 743.255 kb on - strand, within CA264_03175 at 743.294 kb on + strand, within CA264_03175 at 743.295 kb on - strand, within CA264_03175 at 743.369 kb on + strand, within CA264_03175 at 743.502 kb on + strand, within CA264_03175 at 743.502 kb on + strand, within CA264_03175 at 743.502 kb on + strand, within CA264_03175 at 743.557 kb on + strand, within CA264_03175 at 743.557 kb on + strand, within CA264_03175 at 743.557 kb on + strand, within CA264_03175 at 743.557 kb on + strand, within CA264_03175 at 743.676 kb on + strand, within CA264_03175 at 743.704 kb on - strand, within CA264_03175 at 743.704 kb on - strand, within CA264_03175 at 743.788 kb on + strand, within CA264_03175 at 743.788 kb on + strand, within CA264_03175 at 743.793 kb on - strand, within CA264_03175 at 743.793 kb on - strand, within CA264_03175 at 743.832 kb on + strand, within CA264_03175 at 743.832 kb on + strand, within CA264_03175 at 743.838 kb on - strand, within CA264_03175 at 743.869 kb on - strand, within CA264_03175 at 743.902 kb on + strand, within CA264_03175 at 744.006 kb on + strand, within CA264_03175 at 744.080 kb on + strand, within CA264_03175 at 744.083 kb on - strand, within CA264_03175 at 744.098 kb on + strand, within CA264_03175 at 744.142 kb on - strand, within CA264_03175 at 744.142 kb on - strand, within CA264_03175 at 744.142 kb on - strand, within CA264_03175 at 744.155 kb on + strand, within CA264_03175 at 744.156 kb on - strand, within CA264_03175 at 744.352 kb on - strand at 744.385 kb on + strand at 744.385 kb on + strand at 744.386 kb on - strand at 744.386 kb on - strand at 744.422 kb on + strand at 744.423 kb on - strand at 744.427 kb on - strand at 744.445 kb on - strand at 744.488 kb on - strand at 744.503 kb on - strand at 744.516 kb on + strand at 744.517 kb on - strand at 744.683 kb on - strand, within CA264_03180 at 744.773 kb on + strand, within CA264_03180 at 744.774 kb on - strand, within CA264_03180 at 745.026 kb on - strand, within CA264_03180 at 745.264 kb on + strand, within CA264_03180 at 745.264 kb on + strand, within CA264_03180 at 745.303 kb on + strand, within CA264_03180 at 745.382 kb on - strand, within CA264_03180 at 745.383 kb on + strand, within CA264_03180 at 745.383 kb on + strand, within CA264_03180 at 745.384 kb on - strand, within CA264_03180 at 745.389 kb on + strand, within CA264_03180 at 745.389 kb on + strand, within CA264_03180 at 745.402 kb on - strand, within CA264_03180 at 745.428 kb on + strand, within CA264_03180 at 745.428 kb on + strand, within CA264_03180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 740,335 + -0.2 740,342 + +0.8 740,343 - +1.0 740,423 + -0.0 740,424 - +0.2 740,456 - +0.4 740,518 + +0.4 740,518 + +1.1 740,519 - +0.4 740,519 - -0.9 740,520 + +0.4 740,523 + +0.1 740,535 - -0.7 740,541 + +0.6 740,698 - -0.5 740,710 - -0.8 740,898 - -0.0 740,939 - CA264_03170 0.26 +0.8 740,971 + CA264_03170 0.39 +0.4 741,066 + CA264_03170 0.81 -1.2 741,119 + -1.2 741,119 + -0.4 741,120 - +0.2 741,120 - +0.7 741,122 + -0.9 741,122 + +0.6 741,122 + +0.0 741,129 + -0.2 741,129 + +0.4 741,130 - +0.1 741,131 + -0.6 741,134 + +0.4 741,134 + +0.5 741,135 - +0.1 741,135 - -0.2 741,154 - -0.2 741,154 - -0.9 741,161 + -1.4 741,172 + -1.4 741,172 + -1.1 741,190 + -0.3 741,225 - -1.6 741,270 + -2.4 741,274 + -1.1 741,301 + -0.9 741,302 - -2.2 741,302 - -1.9 741,304 + -2.0 741,304 + -1.6 741,304 + -0.7 741,358 - -3.6 741,358 - -1.6 741,358 - -2.3 741,368 + +2.0 741,387 + -1.9 741,387 + -1.4 741,440 - -1.9 741,442 + -0.8 741,442 + -1.0 741,609 + +0.8 741,616 - -1.6 741,671 + CA264_03175 0.12 -1.5 741,679 - CA264_03175 0.12 -1.4 741,725 + CA264_03175 0.13 -0.7 741,725 + CA264_03175 0.13 -1.0 741,733 - CA264_03175 0.14 -1.1 741,733 - CA264_03175 0.14 -1.4 741,826 + CA264_03175 0.17 +0.2 741,832 + CA264_03175 0.17 -0.3 741,832 + CA264_03175 0.17 -0.9 741,832 + CA264_03175 0.17 -1.1 741,832 + CA264_03175 0.17 -0.0 741,832 + CA264_03175 0.17 +0.6 741,832 + CA264_03175 0.17 +0.4 741,832 + CA264_03175 0.17 +1.5 741,833 + CA264_03175 0.17 -2.0 741,833 - CA264_03175 0.17 -0.8 741,833 - CA264_03175 0.17 -0.6 741,833 - CA264_03175 0.17 -2.5 741,833 - CA264_03175 0.17 -1.4 741,833 - CA264_03175 0.17 -2.6 741,836 + CA264_03175 0.17 -1.4 741,837 - CA264_03175 0.17 -1.6 741,837 - CA264_03175 0.17 -3.3 741,842 - CA264_03175 0.17 -2.7 741,903 - CA264_03175 0.19 +0.8 741,940 + CA264_03175 0.20 -1.4 741,940 + CA264_03175 0.20 +1.0 741,948 - CA264_03175 0.20 -3.5 741,975 - CA264_03175 0.21 -1.0 742,037 + CA264_03175 0.23 -0.2 742,076 + CA264_03175 0.24 -1.0 742,076 + CA264_03175 0.24 -1.4 742,077 - CA264_03175 0.24 -0.8 742,077 - CA264_03175 0.24 -3.4 742,122 + CA264_03175 0.26 -1.7 742,139 + CA264_03175 0.26 +0.4 742,139 + CA264_03175 0.26 -1.9 742,157 + CA264_03175 0.27 -0.6 742,213 + CA264_03175 0.29 -1.0 742,213 + CA264_03175 0.29 -0.3 742,214 - CA264_03175 0.29 -1.6 742,271 + CA264_03175 0.30 -0.7 742,350 - CA264_03175 0.33 -2.0 742,389 + CA264_03175 0.34 -2.2 742,411 - CA264_03175 0.35 -2.0 742,411 - CA264_03175 0.35 -2.7 742,411 - CA264_03175 0.35 -1.2 742,492 - CA264_03175 0.37 -2.6 742,496 + CA264_03175 0.38 +0.2 742,496 + CA264_03175 0.38 -1.1 742,497 - CA264_03175 0.38 -2.1 742,500 + CA264_03175 0.38 -1.2 742,500 + CA264_03175 0.38 -0.2 742,521 - CA264_03175 0.38 -2.7 742,521 - CA264_03175 0.38 -1.4 742,575 - CA264_03175 0.40 -1.4 742,577 + CA264_03175 0.40 -1.4 742,603 - CA264_03175 0.41 +0.1 742,603 - CA264_03175 0.41 -2.1 742,630 + CA264_03175 0.42 -0.9 742,630 + CA264_03175 0.42 +0.4 742,631 - CA264_03175 0.42 -2.3 742,667 + CA264_03175 0.43 +0.8 742,671 + CA264_03175 0.43 -2.3 742,672 - CA264_03175 0.43 -1.8 742,672 - CA264_03175 0.43 -2.1 742,692 + CA264_03175 0.44 -0.4 742,692 + CA264_03175 0.44 -1.0 742,723 - CA264_03175 0.45 -0.8 742,752 + CA264_03175 0.46 -0.9 742,767 - CA264_03175 0.46 -2.5 742,782 + CA264_03175 0.47 -1.6 742,783 - CA264_03175 0.47 -2.7 742,852 - CA264_03175 0.49 -1.4 742,971 + CA264_03175 0.52 +0.4 742,972 - CA264_03175 0.52 -1.2 743,049 - CA264_03175 0.55 -1.0 743,061 + CA264_03175 0.55 -0.7 743,075 + CA264_03175 0.56 -1.0 743,076 - CA264_03175 0.56 -1.2 743,081 + CA264_03175 0.56 -1.0 743,081 + CA264_03175 0.56 +0.1 743,081 + CA264_03175 0.56 -1.4 743,082 - CA264_03175 0.56 -3.1 743,082 - CA264_03175 0.56 -1.0 743,085 + CA264_03175 0.56 -2.4 743,086 - CA264_03175 0.56 -1.6 743,129 + CA264_03175 0.57 +0.0 743,163 + CA264_03175 0.58 -1.2 743,213 - CA264_03175 0.60 -3.9 743,255 - CA264_03175 0.61 -2.8 743,294 + CA264_03175 0.63 -0.7 743,295 - CA264_03175 0.63 -0.2 743,369 + CA264_03175 0.65 -0.5 743,502 + CA264_03175 0.69 -0.7 743,502 + CA264_03175 0.69 -0.8 743,502 + CA264_03175 0.69 -1.9 743,557 + CA264_03175 0.71 -0.8 743,557 + CA264_03175 0.71 +0.5 743,557 + CA264_03175 0.71 -2.5 743,557 + CA264_03175 0.71 +0.6 743,676 + CA264_03175 0.75 -1.2 743,704 - CA264_03175 0.75 -2.0 743,704 - CA264_03175 0.75 -2.8 743,788 + CA264_03175 0.78 -0.0 743,788 + CA264_03175 0.78 -0.2 743,793 - CA264_03175 0.78 -1.6 743,793 - CA264_03175 0.78 -0.4 743,832 + CA264_03175 0.79 +0.2 743,832 + CA264_03175 0.79 -0.2 743,838 - CA264_03175 0.80 -1.3 743,869 - CA264_03175 0.81 -1.3 743,902 + CA264_03175 0.82 -0.0 744,006 + CA264_03175 0.85 +0.4 744,080 + CA264_03175 0.87 +0.5 744,083 - CA264_03175 0.87 -0.6 744,098 + CA264_03175 0.88 -0.0 744,142 - CA264_03175 0.89 +0.2 744,142 - CA264_03175 0.89 -3.4 744,142 - CA264_03175 0.89 -1.8 744,155 + CA264_03175 0.90 +0.0 744,156 - CA264_03175 0.90 -1.1 744,352 - -2.4 744,385 + -0.5 744,385 + -0.6 744,386 - -1.9 744,386 - -2.1 744,422 + +0.4 744,423 - -2.1 744,427 - -0.6 744,445 - +0.4 744,488 - -2.1 744,503 - -1.8 744,516 + -0.9 744,517 - -1.8 744,683 - CA264_03180 0.15 -2.7 744,773 + CA264_03180 0.24 -2.2 744,774 - CA264_03180 0.24 -1.5 745,026 - CA264_03180 0.48 -2.2 745,264 + CA264_03180 0.70 -3.0 745,264 + CA264_03180 0.70 -1.2 745,303 + CA264_03180 0.74 -1.5 745,382 - CA264_03180 0.82 -0.9 745,383 + CA264_03180 0.82 -1.1 745,383 + CA264_03180 0.82 -1.7 745,384 - CA264_03180 0.82 -2.5 745,389 + CA264_03180 0.82 -2.2 745,389 + CA264_03180 0.82 -2.0 745,402 - CA264_03180 0.83 -3.0 745,428 + CA264_03180 0.86 -1.3 745,428 + CA264_03180 0.86 -1.4
Or see this region's nucleotide sequence