Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02620 and CA264_02625 are separated by 145 nucleotides CA264_02625 and CA264_02630 are separated by 50 nucleotides CA264_02630 and CA264_02635 are separated by 69 nucleotides
CA264_02620: CA264_02620 - two-component sensor histidine kinase, at 606,216 to 607,613
_02620
CA264_02625: CA264_02625 - hypothetical protein, at 607,759 to 609,330
_02625
CA264_02630: CA264_02630 - carbonic anhydrase, at 609,381 to 610,022
_02630
CA264_02635: CA264_02635 - hypothetical protein, at 610,092 to 610,700
_02635
Position (kb) 607
608
609
610 Strain fitness (log2 ratio) -2
-1
0
1
2 at 607.343 kb on - strand, within CA264_02620 at 607.611 kb on + strand at 607.611 kb on + strand at 607.623 kb on - strand at 607.623 kb on - strand at 607.645 kb on - strand at 607.655 kb on + strand at 607.702 kb on + strand at 607.744 kb on - strand at 607.787 kb on - strand at 607.914 kb on - strand at 607.991 kb on + strand, within CA264_02625 at 607.992 kb on - strand, within CA264_02625 at 608.103 kb on - strand, within CA264_02625 at 608.104 kb on + strand, within CA264_02625 at 608.105 kb on - strand, within CA264_02625 at 608.360 kb on - strand, within CA264_02625 at 608.372 kb on + strand, within CA264_02625 at 608.431 kb on + strand, within CA264_02625 at 608.431 kb on + strand, within CA264_02625 at 608.432 kb on - strand, within CA264_02625 at 608.468 kb on + strand, within CA264_02625 at 608.554 kb on + strand, within CA264_02625 at 608.554 kb on + strand, within CA264_02625 at 608.554 kb on + strand, within CA264_02625 at 608.561 kb on + strand, within CA264_02625 at 608.561 kb on + strand, within CA264_02625 at 608.562 kb on - strand, within CA264_02625 at 608.568 kb on + strand, within CA264_02625 at 608.682 kb on - strand, within CA264_02625 at 608.685 kb on + strand, within CA264_02625 at 608.686 kb on - strand, within CA264_02625 at 608.686 kb on - strand, within CA264_02625 at 608.686 kb on - strand, within CA264_02625 at 608.729 kb on + strand, within CA264_02625 at 608.729 kb on + strand, within CA264_02625 at 608.835 kb on - strand, within CA264_02625 at 608.911 kb on + strand, within CA264_02625 at 608.975 kb on + strand, within CA264_02625 at 609.049 kb on + strand, within CA264_02625 at 609.049 kb on + strand, within CA264_02625 at 609.050 kb on - strand, within CA264_02625 at 609.062 kb on - strand, within CA264_02625 at 609.067 kb on + strand, within CA264_02625 at 609.108 kb on + strand, within CA264_02625 at 609.152 kb on + strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.219 kb on - strand at 609.224 kb on - strand at 609.230 kb on + strand at 609.252 kb on + strand at 609.253 kb on - strand at 609.328 kb on + strand at 609.376 kb on + strand at 609.377 kb on - strand at 609.377 kb on - strand at 609.377 kb on - strand at 609.379 kb on - strand at 609.379 kb on - strand at 609.379 kb on - strand at 609.619 kb on - strand, within CA264_02630 at 609.635 kb on + strand, within CA264_02630 at 609.635 kb on + strand, within CA264_02630 at 609.667 kb on - strand, within CA264_02630 at 609.740 kb on + strand, within CA264_02630 at 609.740 kb on + strand, within CA264_02630 at 609.864 kb on - strand, within CA264_02630 at 609.915 kb on + strand, within CA264_02630 at 609.915 kb on + strand, within CA264_02630 at 609.987 kb on + strand at 609.987 kb on + strand at 609.987 kb on + strand at 610.021 kb on - strand at 610.034 kb on - strand at 610.040 kb on - strand at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.268 kb on + strand, within CA264_02635 at 610.321 kb on - strand, within CA264_02635
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 607,343 - CA264_02620 0.81 +0.3 607,611 + +0.1 607,611 + +0.9 607,623 - +0.6 607,623 - +0.1 607,645 - +0.8 607,655 + -1.2 607,702 + +0.9 607,744 - -1.0 607,787 - -0.6 607,914 - +1.4 607,991 + CA264_02625 0.15 +0.5 607,992 - CA264_02625 0.15 +0.9 608,103 - CA264_02625 0.22 +1.5 608,104 + CA264_02625 0.22 +1.1 608,105 - CA264_02625 0.22 +0.6 608,360 - CA264_02625 0.38 +0.8 608,372 + CA264_02625 0.39 +2.2 608,431 + CA264_02625 0.43 +0.5 608,431 + CA264_02625 0.43 +0.7 608,432 - CA264_02625 0.43 +0.1 608,468 + CA264_02625 0.45 -0.0 608,554 + CA264_02625 0.51 -0.7 608,554 + CA264_02625 0.51 +1.1 608,554 + CA264_02625 0.51 -0.0 608,561 + CA264_02625 0.51 +0.9 608,561 + CA264_02625 0.51 +2.0 608,562 - CA264_02625 0.51 +0.3 608,568 + CA264_02625 0.51 +0.1 608,682 - CA264_02625 0.59 +0.3 608,685 + CA264_02625 0.59 -0.1 608,686 - CA264_02625 0.59 +0.3 608,686 - CA264_02625 0.59 -0.6 608,686 - CA264_02625 0.59 -0.1 608,729 + CA264_02625 0.62 +0.0 608,729 + CA264_02625 0.62 -1.8 608,835 - CA264_02625 0.68 +0.4 608,911 + CA264_02625 0.73 +0.7 608,975 + CA264_02625 0.77 +0.6 609,049 + CA264_02625 0.82 -0.4 609,049 + CA264_02625 0.82 +1.1 609,050 - CA264_02625 0.82 -1.6 609,062 - CA264_02625 0.83 -0.1 609,067 + CA264_02625 0.83 +0.0 609,108 + CA264_02625 0.86 -0.9 609,152 + CA264_02625 0.89 +1.0 609,153 - CA264_02625 0.89 +0.7 609,153 - CA264_02625 0.89 +0.1 609,153 - CA264_02625 0.89 -0.5 609,153 - CA264_02625 0.89 -0.1 609,219 - -0.1 609,224 - -0.5 609,230 + -0.4 609,252 + +1.0 609,253 - -0.1 609,328 + +0.1 609,376 + -0.3 609,377 - -0.5 609,377 - -0.3 609,377 - -0.4 609,379 - -0.4 609,379 - +0.0 609,379 - +0.6 609,619 - CA264_02630 0.37 +0.3 609,635 + CA264_02630 0.40 +1.1 609,635 + CA264_02630 0.40 -0.2 609,667 - CA264_02630 0.45 -0.5 609,740 + CA264_02630 0.56 -0.4 609,740 + CA264_02630 0.56 +0.0 609,864 - CA264_02630 0.75 +0.3 609,915 + CA264_02630 0.83 +1.8 609,915 + CA264_02630 0.83 +0.3 609,987 + +0.8 609,987 + -0.1 609,987 + +2.6 610,021 - -0.2 610,034 - +0.1 610,040 - -0.4 610,173 + CA264_02635 0.13 +0.0 610,173 + CA264_02635 0.13 -1.1 610,173 + CA264_02635 0.13 -0.2 610,173 + CA264_02635 0.13 -0.7 610,173 + CA264_02635 0.13 -0.4 610,268 + CA264_02635 0.29 +0.4 610,321 - CA264_02635 0.38 +1.2
Or see this region's nucleotide sequence