Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02485

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02480 and CA264_02485 are separated by 80 nucleotidesCA264_02485 and CA264_02490 are separated by 2 nucleotides CA264_02480: CA264_02480 - 3-dehydroquinate synthase, at 576,701 to 577,879 _02480 CA264_02485: CA264_02485 - polyprenyltransferase, at 577,960 to 578,868 _02485 CA264_02490: CA264_02490 - hydrolase TatD, at 578,871 to 579,812 _02490 Position (kb) 577 578 579Strain fitness (log2 ratio) -1 0 1 2at 577.000 kb on - strand, within CA264_02480at 577.054 kb on - strand, within CA264_02480at 577.261 kb on + strand, within CA264_02480at 577.274 kb on + strand, within CA264_02480at 577.274 kb on + strand, within CA264_02480at 577.457 kb on + strand, within CA264_02480at 577.458 kb on - strand, within CA264_02480at 577.509 kb on - strand, within CA264_02480at 577.509 kb on - strand, within CA264_02480at 577.539 kb on + strand, within CA264_02480at 577.540 kb on - strand, within CA264_02480at 577.570 kb on + strand, within CA264_02480at 577.680 kb on + strand, within CA264_02480at 577.681 kb on - strand, within CA264_02480at 577.745 kb on + strand, within CA264_02480at 577.830 kb on + strandat 577.830 kb on + strandat 577.830 kb on + strandat 577.830 kb on + strandat 577.831 kb on - strandat 577.831 kb on - strandat 577.833 kb on - strandat 577.851 kb on - strandat 577.893 kb on + strandat 577.894 kb on - strandat 577.915 kb on + strandat 577.916 kb on - strandat 577.916 kb on - strandat 577.916 kb on - strandat 577.919 kb on + strandat 577.920 kb on - strandat 577.920 kb on - strandat 577.920 kb on - strandat 577.988 kb on + strandat 578.192 kb on + strand, within CA264_02485at 578.333 kb on + strand, within CA264_02485at 578.333 kb on + strand, within CA264_02485at 578.371 kb on + strand, within CA264_02485at 578.372 kb on - strand, within CA264_02485at 578.475 kb on - strand, within CA264_02485at 578.575 kb on + strand, within CA264_02485at 578.575 kb on + strand, within CA264_02485at 578.576 kb on - strand, within CA264_02485at 578.576 kb on - strand, within CA264_02485at 578.671 kb on + strand, within CA264_02485at 578.672 kb on - strand, within CA264_02485at 578.685 kb on - strand, within CA264_02485at 578.761 kb on - strand, within CA264_02485at 578.799 kb on + strandat 578.800 kb on - strandat 578.800 kb on - strandat 578.802 kb on + strandat 578.802 kb on + strandat 578.803 kb on - strandat 578.849 kb on + strandat 578.850 kb on - strandat 578.877 kb on + strandat 578.877 kb on + strandat 578.877 kb on + strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.880 kb on + strandat 578.880 kb on + strandat 578.880 kb on + strandat 578.880 kb on + strandat 578.880 kb on + strandat 578.880 kb on + strandat 578.885 kb on + strandat 578.910 kb on + strandat 578.979 kb on + strand, within CA264_02490at 579.075 kb on + strand, within CA264_02490at 579.160 kb on - strand, within CA264_02490at 579.167 kb on + strand, within CA264_02490at 579.221 kb on + strand, within CA264_02490at 579.233 kb on - strand, within CA264_02490at 579.293 kb on + strand, within CA264_02490at 579.409 kb on - strand, within CA264_02490at 579.442 kb on + strand, within CA264_02490at 579.487 kb on - strand, within CA264_02490at 579.534 kb on + strand, within CA264_02490at 579.561 kb on - strand, within CA264_02490at 579.561 kb on - strand, within CA264_02490at 579.576 kb on - strand, within CA264_02490at 579.593 kb on - strand, within CA264_02490at 579.653 kb on - strand, within CA264_02490at 579.709 kb on - strand, within CA264_02490at 579.806 kb on + strandat 579.843 kb on - strandat 579.843 kb on - strandat 579.847 kb on + strandat 579.847 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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577,000 - CA264_02480 0.25 +0.6
577,054 - CA264_02480 0.30 -0.2
577,261 + CA264_02480 0.47 +1.0
577,274 + CA264_02480 0.49 +0.4
577,274 + CA264_02480 0.49 +0.3
577,457 + CA264_02480 0.64 +0.7
577,458 - CA264_02480 0.64 +0.3
577,509 - CA264_02480 0.69 -0.2
577,509 - CA264_02480 0.69 -0.0
577,539 + CA264_02480 0.71 -0.1
577,540 - CA264_02480 0.71 -0.3
577,570 + CA264_02480 0.74 +0.6
577,680 + CA264_02480 0.83 -0.2
577,681 - CA264_02480 0.83 -1.1
577,745 + CA264_02480 0.89 -0.1
577,830 + +0.2
577,830 + +2.4
577,830 + -0.2
577,830 + -0.9
577,831 - -0.4
577,831 - -0.7
577,833 - -0.2
577,851 - +0.6
577,893 + -0.1
577,894 - -0.8
577,915 + +0.7
577,916 - +1.1
577,916 - +0.2
577,916 - -0.1
577,919 + +0.5
577,920 - +0.4
577,920 - -0.4
577,920 - +0.2
577,988 + +0.1
578,192 + CA264_02485 0.26 +0.2
578,333 + CA264_02485 0.41 -0.2
578,333 + CA264_02485 0.41 +0.8
578,371 + CA264_02485 0.45 -0.7
578,372 - CA264_02485 0.45 +0.6
578,475 - CA264_02485 0.57 +0.1
578,575 + CA264_02485 0.68 -0.7
578,575 + CA264_02485 0.68 +0.8
578,576 - CA264_02485 0.68 -0.5
578,576 - CA264_02485 0.68 +0.8
578,671 + CA264_02485 0.78 -0.4
578,672 - CA264_02485 0.78 +0.3
578,685 - CA264_02485 0.80 -0.0
578,761 - CA264_02485 0.88 -0.8
578,799 + +0.4
578,800 - +0.1
578,800 - -0.0
578,802 + -0.4
578,802 + +0.6
578,803 - -0.6
578,849 + +0.4
578,850 - +0.3
578,877 + +0.1
578,877 + -1.4
578,877 + +1.2
578,878 - +0.1
578,878 - -0.3
578,878 - -0.3
578,878 - +0.4
578,878 - -0.9
578,880 + -1.1
578,880 + -0.0
578,880 + +1.0
578,880 + +0.7
578,880 + -0.5
578,880 + +0.7
578,885 + +0.4
578,910 + +0.2
578,979 + CA264_02490 0.11 -0.9
579,075 + CA264_02490 0.22 +1.4
579,160 - CA264_02490 0.31 +0.5
579,167 + CA264_02490 0.31 -0.2
579,221 + CA264_02490 0.37 +0.6
579,233 - CA264_02490 0.38 -0.1
579,293 + CA264_02490 0.45 +0.3
579,409 - CA264_02490 0.57 -0.2
579,442 + CA264_02490 0.61 -0.7
579,487 - CA264_02490 0.65 -0.8
579,534 + CA264_02490 0.70 -0.6
579,561 - CA264_02490 0.73 +1.7
579,561 - CA264_02490 0.73 -0.9
579,576 - CA264_02490 0.75 +0.2
579,593 - CA264_02490 0.77 -0.5
579,653 - CA264_02490 0.83 -0.3
579,709 - CA264_02490 0.89 +1.3
579,806 + +0.4
579,843 - -0.4
579,843 - +1.0
579,847 + -0.3
579,847 + -0.2

Or see this region's nucleotide sequence