Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02460 and CA264_02465 overlap by 4 nucleotides CA264_02465 and CA264_02470 are separated by 99 nucleotides CA264_02470 and CA264_02475 overlap by 56 nucleotides
CA264_02460: CA264_02460 - sugar dehydrogenase, at 572,880 to 573,689
_02460
CA264_02465: CA264_02465 - hypothetical protein, at 573,686 to 573,901
_02465
CA264_02470: CA264_02470 - alkaline phosphatase family protein, at 574,001 to 575,404
_02470
CA264_02475: CA264_02475 - xylose isomerase, at 575,349 to 576,635
_02475
Position (kb) 574
575
576 Strain fitness (log2 ratio) -2
-1
0
1
2 at 573.086 kb on + strand, within CA264_02460 at 573.407 kb on + strand, within CA264_02460 at 573.450 kb on + strand, within CA264_02460 at 573.451 kb on - strand, within CA264_02460 at 573.565 kb on + strand, within CA264_02460 at 573.682 kb on + strand at 573.783 kb on + strand, within CA264_02465 at 573.784 kb on - strand, within CA264_02465 at 573.784 kb on - strand, within CA264_02465 at 573.876 kb on - strand, within CA264_02465 at 573.881 kb on - strand at 573.896 kb on + strand at 573.923 kb on + strand at 573.924 kb on - strand at 573.939 kb on + strand at 573.939 kb on + strand at 573.966 kb on - strand at 573.995 kb on + strand at 573.995 kb on + strand at 574.004 kb on + strand at 574.004 kb on + strand at 574.004 kb on + strand at 574.004 kb on + strand at 574.004 kb on + strand at 574.004 kb on + strand at 574.037 kb on + strand at 574.053 kb on - strand at 574.057 kb on + strand at 574.057 kb on + strand at 574.058 kb on - strand at 574.058 kb on - strand at 574.060 kb on + strand at 574.060 kb on + strand at 574.061 kb on - strand at 574.061 kb on - strand at 574.106 kb on - strand at 574.106 kb on - strand at 574.108 kb on - strand at 574.139 kb on - strand at 574.193 kb on - strand, within CA264_02470 at 574.195 kb on + strand, within CA264_02470 at 574.313 kb on - strand, within CA264_02470 at 574.322 kb on + strand, within CA264_02470 at 574.372 kb on - strand, within CA264_02470 at 574.375 kb on + strand, within CA264_02470 at 574.437 kb on + strand, within CA264_02470 at 574.533 kb on + strand, within CA264_02470 at 574.533 kb on + strand, within CA264_02470 at 574.534 kb on - strand, within CA264_02470 at 574.681 kb on + strand, within CA264_02470 at 574.757 kb on + strand, within CA264_02470 at 574.815 kb on + strand, within CA264_02470 at 574.857 kb on + strand, within CA264_02470 at 574.907 kb on + strand, within CA264_02470 at 575.077 kb on - strand, within CA264_02470 at 575.108 kb on - strand, within CA264_02470 at 575.181 kb on - strand, within CA264_02470 at 575.253 kb on + strand, within CA264_02470 at 575.298 kb on - strand at 575.345 kb on - strand at 575.375 kb on + strand at 575.376 kb on - strand at 575.405 kb on + strand at 575.420 kb on + strand at 575.420 kb on + strand at 575.420 kb on + strand at 575.421 kb on - strand at 575.421 kb on - strand at 575.504 kb on - strand, within CA264_02475 at 575.529 kb on + strand, within CA264_02475 at 575.530 kb on - strand, within CA264_02475 at 575.597 kb on - strand, within CA264_02475 at 575.832 kb on + strand, within CA264_02475 at 575.921 kb on - strand, within CA264_02475 at 576.096 kb on + strand, within CA264_02475 at 576.097 kb on - strand, within CA264_02475 at 576.173 kb on - strand, within CA264_02475 at 576.302 kb on - strand, within CA264_02475 at 576.351 kb on + strand, within CA264_02475 at 576.352 kb on - strand, within CA264_02475 at 576.403 kb on + strand, within CA264_02475 at 576.403 kb on + strand, within CA264_02475
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 573,086 + CA264_02460 0.25 +0.3 573,407 + CA264_02460 0.65 +0.5 573,450 + CA264_02460 0.70 +1.1 573,451 - CA264_02460 0.70 -0.6 573,565 + CA264_02460 0.85 -0.0 573,682 + -0.2 573,783 + CA264_02465 0.45 +1.9 573,784 - CA264_02465 0.45 +0.3 573,784 - CA264_02465 0.45 -0.2 573,876 - CA264_02465 0.88 +0.8 573,881 - +0.1 573,896 + -0.5 573,923 + +0.2 573,924 - +0.4 573,939 + -0.2 573,939 + -1.3 573,966 - +0.3 573,995 + -0.2 573,995 + -0.1 574,004 + -0.2 574,004 + -0.5 574,004 + -0.1 574,004 + +0.5 574,004 + +0.9 574,004 + +0.7 574,037 + +1.5 574,053 - +0.3 574,057 + -0.2 574,057 + -0.4 574,058 - +0.9 574,058 - -0.6 574,060 + +0.3 574,060 + +0.2 574,061 - -0.2 574,061 - -0.2 574,106 - -0.4 574,106 - -0.0 574,108 - +0.7 574,139 - +0.1 574,193 - CA264_02470 0.14 -0.4 574,195 + CA264_02470 0.14 +0.1 574,313 - CA264_02470 0.22 -0.6 574,322 + CA264_02470 0.23 -0.2 574,372 - CA264_02470 0.26 -1.9 574,375 + CA264_02470 0.27 -0.7 574,437 + CA264_02470 0.31 -0.0 574,533 + CA264_02470 0.38 -0.3 574,533 + CA264_02470 0.38 -1.4 574,534 - CA264_02470 0.38 -0.6 574,681 + CA264_02470 0.48 -1.1 574,757 + CA264_02470 0.54 -0.2 574,815 + CA264_02470 0.58 +0.8 574,857 + CA264_02470 0.61 +0.5 574,907 + CA264_02470 0.65 -0.0 575,077 - CA264_02470 0.77 -0.2 575,108 - CA264_02470 0.79 +0.2 575,181 - CA264_02470 0.84 +0.3 575,253 + CA264_02470 0.89 -0.6 575,298 - +0.2 575,345 - -0.7 575,375 + +0.4 575,376 - -0.1 575,405 + +1.6 575,420 + -0.8 575,420 + +0.3 575,420 + +0.1 575,421 - +0.2 575,421 - +0.6 575,504 - CA264_02475 0.12 -0.3 575,529 + CA264_02475 0.14 +0.3 575,530 - CA264_02475 0.14 -0.4 575,597 - CA264_02475 0.19 -0.0 575,832 + CA264_02475 0.38 +0.4 575,921 - CA264_02475 0.44 +0.5 576,096 + CA264_02475 0.58 -0.8 576,097 - CA264_02475 0.58 -0.7 576,173 - CA264_02475 0.64 -0.1 576,302 - CA264_02475 0.74 +0.1 576,351 + CA264_02475 0.78 -0.9 576,352 - CA264_02475 0.78 +0.2 576,403 + CA264_02475 0.82 -0.0 576,403 + CA264_02475 0.82 +1.5
Or see this region's nucleotide sequence