Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02270

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02260 and CA264_02265 overlap by 20 nucleotidesCA264_02265 and CA264_02270 are separated by 79 nucleotidesCA264_02270 and CA264_02275 are separated by 296 nucleotides CA264_02260: CA264_02260 - hypothetical protein, at 522,962 to 525,358 _02260 CA264_02265: CA264_02265 - phosphonate ABC transporter ATP-binding protein, at 525,339 to 526,058 _02265 CA264_02270: CA264_02270 - efflux transporter periplasmic adaptor subunit, at 526,138 to 527,388 _02270 CA264_02275: CA264_02275 - sigma-54-dependent Fis family transcriptional regulator, at 527,685 to 529,067 _02275 Position (kb) 526 527 528Strain fitness (log2 ratio) -2 -1 0 1 2at 525.167 kb on - strandat 525.167 kb on - strandat 525.205 kb on + strandat 525.240 kb on + strandat 525.240 kb on + strandat 525.240 kb on + strandat 525.241 kb on - strandat 525.241 kb on - strandat 525.241 kb on - strandat 525.241 kb on - strandat 525.246 kb on + strandat 525.246 kb on + strandat 525.247 kb on - strandat 525.247 kb on - strandat 525.248 kb on + strandat 525.248 kb on + strandat 525.248 kb on + strandat 525.248 kb on + strandat 525.248 kb on + strandat 525.249 kb on - strandat 525.251 kb on - strandat 525.303 kb on + strandat 525.305 kb on + strandat 525.305 kb on + strandat 525.306 kb on - strandat 525.306 kb on - strandat 525.306 kb on - strandat 525.306 kb on - strandat 525.340 kb on + strandat 525.345 kb on + strandat 525.553 kb on - strand, within CA264_02265at 525.554 kb on + strand, within CA264_02265at 525.703 kb on + strand, within CA264_02265at 525.747 kb on + strand, within CA264_02265at 525.764 kb on + strand, within CA264_02265at 525.905 kb on + strand, within CA264_02265at 525.957 kb on + strand, within CA264_02265at 525.958 kb on - strand, within CA264_02265at 526.010 kb on - strandat 526.039 kb on - strandat 526.042 kb on - strandat 526.071 kb on - strandat 526.077 kb on - strandat 526.095 kb on + strandat 526.105 kb on + strandat 526.105 kb on + strandat 526.106 kb on - strandat 526.140 kb on - strandat 526.192 kb on + strandat 526.192 kb on + strandat 526.233 kb on - strandat 526.329 kb on - strand, within CA264_02270at 526.329 kb on - strand, within CA264_02270at 526.384 kb on + strand, within CA264_02270at 526.541 kb on + strand, within CA264_02270at 526.556 kb on + strand, within CA264_02270at 526.556 kb on + strand, within CA264_02270at 526.604 kb on - strand, within CA264_02270at 526.687 kb on + strand, within CA264_02270at 526.691 kb on + strand, within CA264_02270at 526.691 kb on + strand, within CA264_02270at 526.691 kb on + strand, within CA264_02270at 526.692 kb on - strand, within CA264_02270at 526.757 kb on - strand, within CA264_02270at 526.798 kb on + strand, within CA264_02270at 526.798 kb on + strand, within CA264_02270at 526.835 kb on + strand, within CA264_02270at 526.841 kb on + strand, within CA264_02270at 526.842 kb on - strand, within CA264_02270at 526.842 kb on - strand, within CA264_02270at 526.913 kb on + strand, within CA264_02270at 526.938 kb on + strand, within CA264_02270at 526.940 kb on + strand, within CA264_02270at 526.940 kb on + strand, within CA264_02270at 526.940 kb on + strand, within CA264_02270at 526.941 kb on - strand, within CA264_02270at 526.941 kb on - strand, within CA264_02270at 526.941 kb on - strand, within CA264_02270at 527.027 kb on + strand, within CA264_02270at 527.028 kb on - strand, within CA264_02270at 527.127 kb on - strand, within CA264_02270at 527.165 kb on + strand, within CA264_02270at 527.166 kb on - strand, within CA264_02270at 527.300 kb on + strandat 527.301 kb on - strandat 527.388 kb on + strandat 527.389 kb on - strandat 527.396 kb on - strandat 527.412 kb on - strandat 527.412 kb on - strandat 527.426 kb on - strandat 527.450 kb on + strandat 527.520 kb on + strandat 527.523 kb on - strandat 527.523 kb on - strandat 527.691 kb on - strandat 527.732 kb on + strandat 527.826 kb on + strand, within CA264_02275at 527.859 kb on + strand, within CA264_02275at 527.860 kb on - strand, within CA264_02275at 527.860 kb on - strand, within CA264_02275at 527.902 kb on + strand, within CA264_02275at 527.965 kb on + strand, within CA264_02275at 527.966 kb on - strand, within CA264_02275at 528.217 kb on + strand, within CA264_02275at 528.217 kb on + strand, within CA264_02275at 528.218 kb on - strand, within CA264_02275at 528.218 kb on - strand, within CA264_02275

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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525,167 - -0.2
525,167 - +0.1
525,205 + -0.1
525,240 + +0.1
525,240 + +0.3
525,240 + +0.1
525,241 - +1.5
525,241 - -0.3
525,241 - +0.2
525,241 - -1.3
525,246 + +0.9
525,246 + -0.7
525,247 - +0.6
525,247 - -1.7
525,248 + -1.1
525,248 + +1.5
525,248 + -0.8
525,248 + +0.6
525,248 + +0.2
525,249 - -0.4
525,251 - -0.2
525,303 + +0.3
525,305 + -0.5
525,305 + -0.1
525,306 - +0.5
525,306 - -0.3
525,306 - -0.2
525,306 - +0.1
525,340 + -1.6
525,345 + +0.4
525,553 - CA264_02265 0.30 -2.4
525,554 + CA264_02265 0.30 -1.6
525,703 + CA264_02265 0.51 +0.3
525,747 + CA264_02265 0.57 +0.2
525,764 + CA264_02265 0.59 +1.2
525,905 + CA264_02265 0.79 -0.9
525,957 + CA264_02265 0.86 -0.2
525,958 - CA264_02265 0.86 -0.2
526,010 - -0.2
526,039 - +0.5
526,042 - +0.2
526,071 - +0.3
526,077 - -0.1
526,095 + +0.1
526,105 + +1.0
526,105 + -0.3
526,106 - +0.5
526,140 - -0.1
526,192 + -0.9
526,192 + +0.2
526,233 - -0.6
526,329 - CA264_02270 0.15 -0.7
526,329 - CA264_02270 0.15 +0.3
526,384 + CA264_02270 0.20 -0.1
526,541 + CA264_02270 0.32 -0.6
526,556 + CA264_02270 0.33 -0.0
526,556 + CA264_02270 0.33 -0.0
526,604 - CA264_02270 0.37 -0.6
526,687 + CA264_02270 0.44 +1.0
526,691 + CA264_02270 0.44 +1.9
526,691 + CA264_02270 0.44 +0.1
526,691 + CA264_02270 0.44 -0.2
526,692 - CA264_02270 0.44 +0.4
526,757 - CA264_02270 0.49 -0.0
526,798 + CA264_02270 0.53 +0.9
526,798 + CA264_02270 0.53 -0.1
526,835 + CA264_02270 0.56 -0.1
526,841 + CA264_02270 0.56 +0.7
526,842 - CA264_02270 0.56 -0.9
526,842 - CA264_02270 0.56 -1.3
526,913 + CA264_02270 0.62 +1.1
526,938 + CA264_02270 0.64 +0.5
526,940 + CA264_02270 0.64 -0.4
526,940 + CA264_02270 0.64 -0.3
526,940 + CA264_02270 0.64 +0.6
526,941 - CA264_02270 0.64 +0.1
526,941 - CA264_02270 0.64 -0.5
526,941 - CA264_02270 0.64 -0.7
527,027 + CA264_02270 0.71 -0.0
527,028 - CA264_02270 0.71 -0.0
527,127 - CA264_02270 0.79 +0.1
527,165 + CA264_02270 0.82 +0.6
527,166 - CA264_02270 0.82 +0.2
527,300 + -0.1
527,301 - +1.2
527,388 + -0.2
527,389 - +0.5
527,396 - -0.4
527,412 - +0.3
527,412 - -0.0
527,426 - -0.3
527,450 + +0.1
527,520 + -0.3
527,523 - -0.2
527,523 - -0.1
527,691 - +0.2
527,732 + +0.8
527,826 + CA264_02275 0.10 +1.0
527,859 + CA264_02275 0.13 -0.7
527,860 - CA264_02275 0.13 +0.1
527,860 - CA264_02275 0.13 -1.0
527,902 + CA264_02275 0.16 +0.8
527,965 + CA264_02275 0.20 +0.4
527,966 - CA264_02275 0.20 -0.1
528,217 + CA264_02275 0.38 +0.5
528,217 + CA264_02275 0.38 +0.1
528,218 - CA264_02275 0.39 -0.1
528,218 - CA264_02275 0.39 +0.8

Or see this region's nucleotide sequence