Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01560

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01555 and CA264_01560 are separated by 220 nucleotidesCA264_01560 and CA264_01565 are separated by 330 nucleotides CA264_01555: CA264_01555 - hypothetical protein, at 367,225 to 368,091 _01555 CA264_01560: CA264_01560 - hypothetical protein, at 368,312 to 369,418 _01560 CA264_01565: CA264_01565 - tellurium resistance protein TerC, at 369,749 to 370,690 _01565 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2at 367.386 kb on - strand, within CA264_01555at 367.432 kb on + strand, within CA264_01555at 367.568 kb on + strand, within CA264_01555at 367.616 kb on + strand, within CA264_01555at 367.617 kb on - strand, within CA264_01555at 367.660 kb on + strand, within CA264_01555at 367.661 kb on - strand, within CA264_01555at 367.661 kb on - strand, within CA264_01555at 367.785 kb on + strand, within CA264_01555at 367.786 kb on - strand, within CA264_01555at 367.786 kb on - strand, within CA264_01555at 367.889 kb on + strand, within CA264_01555at 368.005 kb on + strandat 368.148 kb on - strandat 368.150 kb on - strandat 368.173 kb on + strandat 368.174 kb on - strandat 368.180 kb on - strandat 368.215 kb on + strandat 368.216 kb on - strandat 368.285 kb on - strandat 368.308 kb on + strandat 368.334 kb on - strandat 368.411 kb on - strandat 368.412 kb on + strandat 368.413 kb on - strandat 368.413 kb on - strandat 368.478 kb on - strand, within CA264_01560at 368.478 kb on - strand, within CA264_01560at 368.594 kb on + strand, within CA264_01560at 368.601 kb on + strand, within CA264_01560at 368.621 kb on + strand, within CA264_01560at 369.174 kb on - strand, within CA264_01560at 369.174 kb on - strand, within CA264_01560at 369.182 kb on - strand, within CA264_01560at 369.389 kb on + strandat 369.454 kb on + strandat 369.476 kb on + strandat 369.526 kb on + strandat 369.526 kb on + strandat 369.526 kb on + strandat 369.528 kb on + strandat 369.528 kb on + strandat 369.528 kb on + strandat 369.530 kb on + strandat 369.531 kb on - strandat 369.531 kb on - strandat 369.531 kb on - strandat 369.533 kb on + strandat 369.534 kb on - strandat 369.534 kb on - strandat 369.555 kb on + strandat 369.556 kb on - strandat 369.616 kb on + strandat 369.617 kb on - strandat 369.623 kb on - strandat 369.623 kb on - strandat 369.623 kb on - strandat 369.623 kb on - strandat 369.652 kb on + strandat 369.670 kb on + strandat 369.670 kb on + strandat 369.671 kb on - strandat 369.671 kb on - strandat 369.713 kb on - strandat 369.738 kb on + strandat 369.751 kb on - strandat 369.787 kb on + strandat 369.866 kb on + strand, within CA264_01565at 369.908 kb on + strand, within CA264_01565at 369.909 kb on - strand, within CA264_01565at 369.910 kb on + strand, within CA264_01565at 369.910 kb on + strand, within CA264_01565at 369.949 kb on + strand, within CA264_01565at 369.969 kb on + strand, within CA264_01565at 369.969 kb on + strand, within CA264_01565at 369.969 kb on + strand, within CA264_01565at 370.011 kb on + strand, within CA264_01565at 370.226 kb on + strand, within CA264_01565at 370.267 kb on + strand, within CA264_01565at 370.268 kb on - strand, within CA264_01565at 370.293 kb on + strand, within CA264_01565at 370.293 kb on + strand, within CA264_01565at 370.294 kb on - strand, within CA264_01565at 370.300 kb on + strand, within CA264_01565at 370.300 kb on + strand, within CA264_01565at 370.300 kb on + strand, within CA264_01565at 370.301 kb on - strand, within CA264_01565at 370.301 kb on - strand, within CA264_01565at 370.325 kb on + strand, within CA264_01565at 370.325 kb on + strand, within CA264_01565at 370.332 kb on - strand, within CA264_01565at 370.338 kb on - strand, within CA264_01565

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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367,386 - CA264_01555 0.19 +0.6
367,432 + CA264_01555 0.24 -0.5
367,568 + CA264_01555 0.40 -0.5
367,616 + CA264_01555 0.45 -1.1
367,617 - CA264_01555 0.45 -1.2
367,660 + CA264_01555 0.50 +0.8
367,661 - CA264_01555 0.50 -1.6
367,661 - CA264_01555 0.50 -0.6
367,785 + CA264_01555 0.65 -0.1
367,786 - CA264_01555 0.65 -0.7
367,786 - CA264_01555 0.65 -0.3
367,889 + CA264_01555 0.77 -0.5
368,005 + -0.4
368,148 - -0.6
368,150 - -0.2
368,173 + -0.3
368,174 - +0.1
368,180 - -1.6
368,215 + -0.2
368,216 - -0.6
368,285 - +0.9
368,308 + +0.4
368,334 - -0.3
368,411 - +0.3
368,412 + +0.8
368,413 - +0.4
368,413 - -0.1
368,478 - CA264_01560 0.15 +2.2
368,478 - CA264_01560 0.15 -1.1
368,594 + CA264_01560 0.25 -1.5
368,601 + CA264_01560 0.26 -0.1
368,621 + CA264_01560 0.28 -0.8
369,174 - CA264_01560 0.78 +0.1
369,174 - CA264_01560 0.78 -0.7
369,182 - CA264_01560 0.79 +0.7
369,389 + -0.1
369,454 + +0.7
369,476 + -0.0
369,526 + +1.1
369,526 + -0.2
369,526 + -0.3
369,528 + -0.1
369,528 + +0.2
369,528 + -0.5
369,530 + -0.2
369,531 - -2.4
369,531 - -0.5
369,531 - -0.6
369,533 + -0.2
369,534 - -1.3
369,534 - +0.2
369,555 + -1.4
369,556 - +0.3
369,616 + +1.2
369,617 - -0.5
369,623 - -0.2
369,623 - -0.3
369,623 - -0.3
369,623 - -0.3
369,652 + +0.7
369,670 + +0.0
369,670 + -0.3
369,671 - -2.2
369,671 - -0.7
369,713 - +0.3
369,738 + -0.0
369,751 - +0.3
369,787 + +0.1
369,866 + CA264_01565 0.12 +0.0
369,908 + CA264_01565 0.17 +0.3
369,909 - CA264_01565 0.17 -0.7
369,910 + CA264_01565 0.17 +1.0
369,910 + CA264_01565 0.17 +0.5
369,949 + CA264_01565 0.21 -0.3
369,969 + CA264_01565 0.23 -0.3
369,969 + CA264_01565 0.23 +0.7
369,969 + CA264_01565 0.23 +0.3
370,011 + CA264_01565 0.28 +0.8
370,226 + CA264_01565 0.51 -0.3
370,267 + CA264_01565 0.55 -0.2
370,268 - CA264_01565 0.55 -0.0
370,293 + CA264_01565 0.58 -1.0
370,293 + CA264_01565 0.58 -0.2
370,294 - CA264_01565 0.58 +1.1
370,300 + CA264_01565 0.58 -0.2
370,300 + CA264_01565 0.58 -0.8
370,300 + CA264_01565 0.58 +0.0
370,301 - CA264_01565 0.59 -2.0
370,301 - CA264_01565 0.59 -0.0
370,325 + CA264_01565 0.61 +0.7
370,325 + CA264_01565 0.61 +1.7
370,332 - CA264_01565 0.62 -0.0
370,338 - CA264_01565 0.63 +1.2

Or see this region's nucleotide sequence