Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01145

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01135 and CA264_01140 are separated by 54 nucleotidesCA264_01140 and CA264_01145 are separated by 209 nucleotidesCA264_01145 and CA264_01150 are separated by 43 nucleotides CA264_01135: CA264_01135 - uroporphyrinogen decarboxylase, at 250,469 to 251,509 _01135 CA264_01140: CA264_01140 - antibiotic resistance protein MarC, at 251,564 to 252,184 _01140 CA264_01145: CA264_01145 - dienelactone hydrolase, at 252,394 to 253,266 _01145 CA264_01150: CA264_01150 - Maebl, at 253,310 to 254,116 _01150 Position (kb) 252 253 254Strain fitness (log2 ratio) -3 -2 -1 0 1at 251.548 kb on + strandat 251.548 kb on + strandat 251.549 kb on - strandat 251.549 kb on - strandat 251.549 kb on - strandat 251.549 kb on - strandat 251.565 kb on + strandat 251.582 kb on + strandat 251.583 kb on - strandat 251.583 kb on - strandat 251.583 kb on - strandat 251.585 kb on + strandat 251.586 kb on - strandat 251.586 kb on - strandat 251.605 kb on + strandat 251.674 kb on - strand, within CA264_01140at 251.674 kb on - strand, within CA264_01140at 251.678 kb on + strand, within CA264_01140at 251.708 kb on - strand, within CA264_01140at 251.708 kb on - strand, within CA264_01140at 251.713 kb on + strand, within CA264_01140at 251.746 kb on + strand, within CA264_01140at 251.746 kb on + strand, within CA264_01140at 251.747 kb on - strand, within CA264_01140at 251.747 kb on - strand, within CA264_01140at 251.764 kb on - strand, within CA264_01140at 252.007 kb on - strand, within CA264_01140at 252.048 kb on + strand, within CA264_01140at 252.049 kb on - strand, within CA264_01140at 252.049 kb on - strand, within CA264_01140at 252.049 kb on - strand, within CA264_01140at 252.140 kb on + strandat 252.141 kb on - strandat 252.141 kb on - strandat 252.173 kb on + strandat 252.173 kb on + strandat 252.174 kb on - strandat 252.174 kb on - strandat 252.174 kb on - strandat 252.176 kb on + strandat 252.176 kb on + strandat 252.177 kb on - strandat 252.184 kb on + strandat 252.184 kb on + strandat 252.185 kb on - strandat 252.195 kb on + strandat 252.196 kb on - strandat 252.224 kb on + strandat 252.350 kb on + strandat 252.351 kb on - strandat 252.395 kb on + strandat 252.461 kb on + strandat 252.462 kb on - strandat 252.462 kb on - strandat 252.503 kb on + strand, within CA264_01145at 252.510 kb on + strand, within CA264_01145at 252.605 kb on - strand, within CA264_01145at 252.640 kb on - strand, within CA264_01145at 252.659 kb on + strand, within CA264_01145at 252.663 kb on - strand, within CA264_01145at 252.770 kb on + strand, within CA264_01145at 252.771 kb on - strand, within CA264_01145at 252.857 kb on - strand, within CA264_01145at 252.870 kb on - strand, within CA264_01145at 252.901 kb on + strand, within CA264_01145at 252.969 kb on + strand, within CA264_01145at 252.970 kb on - strand, within CA264_01145at 253.003 kb on - strand, within CA264_01145at 253.047 kb on + strand, within CA264_01145at 253.048 kb on - strand, within CA264_01145at 253.250 kb on + strandat 253.384 kb on - strandat 253.384 kb on - strandat 253.454 kb on + strand, within CA264_01150at 253.648 kb on + strand, within CA264_01150at 253.681 kb on + strand, within CA264_01150at 253.687 kb on + strand, within CA264_01150at 253.697 kb on - strand, within CA264_01150at 253.751 kb on + strand, within CA264_01150at 253.751 kb on + strand, within CA264_01150at 254.033 kb on + strand, within CA264_01150at 254.033 kb on + strand, within CA264_01150at 254.034 kb on - strand, within CA264_01150at 254.034 kb on - strand, within CA264_01150at 254.092 kb on + strandat 254.121 kb on - strandat 254.175 kb on + strandat 254.179 kb on + strandat 254.179 kb on + strandat 254.231 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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251,548 + +1.1
251,548 + +0.0
251,549 - +0.8
251,549 - +0.9
251,549 - +0.8
251,549 - +0.1
251,565 + -0.3
251,582 + +0.2
251,583 - +0.1
251,583 - +0.3
251,583 - +0.7
251,585 + -0.0
251,586 - +0.1
251,586 - +0.6
251,605 + -0.4
251,674 - CA264_01140 0.18 +1.2
251,674 - CA264_01140 0.18 +1.2
251,678 + CA264_01140 0.18 +0.1
251,708 - CA264_01140 0.23 +0.3
251,708 - CA264_01140 0.23 +0.1
251,713 + CA264_01140 0.24 -0.2
251,746 + CA264_01140 0.29 +0.6
251,746 + CA264_01140 0.29 +0.6
251,747 - CA264_01140 0.29 -0.5
251,747 - CA264_01140 0.29 -0.6
251,764 - CA264_01140 0.32 +0.4
252,007 - CA264_01140 0.71 +0.6
252,048 + CA264_01140 0.78 -0.2
252,049 - CA264_01140 0.78 +0.1
252,049 - CA264_01140 0.78 -0.1
252,049 - CA264_01140 0.78 +1.1
252,140 + -0.6
252,141 - +0.0
252,141 - +0.7
252,173 + -0.9
252,173 + -0.2
252,174 - -0.7
252,174 - +0.7
252,174 - -0.1
252,176 + +0.2
252,176 + +0.3
252,177 - -0.1
252,184 + +0.5
252,184 + +0.0
252,185 - +0.5
252,195 + +1.4
252,196 - -0.6
252,224 + -0.8
252,350 + -0.1
252,351 - +0.1
252,395 + +0.9
252,461 + +0.1
252,462 - +0.9
252,462 - -0.1
252,503 + CA264_01145 0.12 +1.2
252,510 + CA264_01145 0.13 +1.4
252,605 - CA264_01145 0.24 +0.3
252,640 - CA264_01145 0.28 +0.2
252,659 + CA264_01145 0.30 +0.1
252,663 - CA264_01145 0.31 -0.8
252,770 + CA264_01145 0.43 +1.3
252,771 - CA264_01145 0.43 -0.1
252,857 - CA264_01145 0.53 -0.2
252,870 - CA264_01145 0.55 -0.2
252,901 + CA264_01145 0.58 -0.3
252,969 + CA264_01145 0.66 +0.5
252,970 - CA264_01145 0.66 -0.8
253,003 - CA264_01145 0.70 +0.1
253,047 + CA264_01145 0.75 -0.2
253,048 - CA264_01145 0.75 -0.4
253,250 + -0.3
253,384 - +0.5
253,384 - -0.7
253,454 + CA264_01150 0.18 -0.3
253,648 + CA264_01150 0.42 -0.1
253,681 + CA264_01150 0.46 +0.1
253,687 + CA264_01150 0.47 -0.4
253,697 - CA264_01150 0.48 -0.0
253,751 + CA264_01150 0.55 +0.6
253,751 + CA264_01150 0.55 +0.5
254,033 + CA264_01150 0.90 -1.0
254,033 + CA264_01150 0.90 +0.6
254,034 - CA264_01150 0.90 +0.3
254,034 - CA264_01150 0.90 -0.8
254,092 + -0.2
254,121 - -0.7
254,175 + -3.5
254,179 + -2.2
254,179 + -1.3
254,231 + -2.4

Or see this region's nucleotide sequence