Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00920

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00915 and CA264_00920 are separated by 46 nucleotidesCA264_00920 and CA264_00925 are separated by 212 nucleotides CA264_00915: CA264_00915 - hypothetical protein, at 195,807 to 197,114 _00915 CA264_00920: CA264_00920 - acetyltransferase, at 197,161 to 197,796 _00920 CA264_00925: CA264_00925 - hypothetical protein, at 198,009 to 198,977 _00925 Position (kb) 197 198Strain fitness (log2 ratio) -2 -1 0 1at 196.170 kb on - strand, within CA264_00915at 196.191 kb on + strand, within CA264_00915at 196.210 kb on - strand, within CA264_00915at 196.280 kb on + strand, within CA264_00915at 196.344 kb on - strand, within CA264_00915at 196.459 kb on - strand, within CA264_00915at 196.486 kb on - strand, within CA264_00915at 196.519 kb on - strand, within CA264_00915at 196.519 kb on - strand, within CA264_00915at 196.519 kb on - strand, within CA264_00915at 196.755 kb on - strand, within CA264_00915at 196.768 kb on - strand, within CA264_00915at 196.783 kb on + strand, within CA264_00915at 196.783 kb on + strand, within CA264_00915at 196.784 kb on - strand, within CA264_00915at 196.784 kb on - strand, within CA264_00915at 196.784 kb on - strand, within CA264_00915at 196.784 kb on - strand, within CA264_00915at 196.831 kb on - strand, within CA264_00915at 196.831 kb on - strand, within CA264_00915at 196.937 kb on - strand, within CA264_00915at 196.937 kb on - strand, within CA264_00915at 196.937 kb on - strand, within CA264_00915at 196.937 kb on - strand, within CA264_00915at 196.940 kb on + strand, within CA264_00915at 196.940 kb on + strand, within CA264_00915at 196.941 kb on - strand, within CA264_00915at 196.974 kb on - strand, within CA264_00915at 197.041 kb on + strandat 197.150 kb on - strandat 197.180 kb on + strandat 197.180 kb on + strandat 197.181 kb on - strandat 197.181 kb on - strandat 197.183 kb on + strandat 197.184 kb on - strandat 197.184 kb on - strandat 197.184 kb on - strandat 197.184 kb on - strandat 197.184 kb on - strandat 197.213 kb on + strandat 197.213 kb on + strandat 197.213 kb on + strandat 197.213 kb on + strandat 197.213 kb on + strandat 197.214 kb on - strandat 197.218 kb on - strandat 197.218 kb on - strandat 197.218 kb on - strandat 197.219 kb on + strandat 197.219 kb on + strandat 197.220 kb on - strandat 197.429 kb on + strand, within CA264_00920at 197.429 kb on + strand, within CA264_00920at 197.599 kb on + strand, within CA264_00920at 197.640 kb on + strand, within CA264_00920at 197.640 kb on + strand, within CA264_00920at 197.908 kb on + strandat 197.908 kb on + strandat 197.909 kb on - strandat 197.975 kb on - strandat 197.978 kb on + strandat 197.990 kb on - strandat 198.008 kb on + strandat 198.009 kb on - strandat 198.028 kb on + strandat 198.029 kb on - strandat 198.029 kb on - strandat 198.036 kb on + strandat 198.039 kb on + strandat 198.040 kb on - strandat 198.040 kb on - strandat 198.264 kb on - strand, within CA264_00925at 198.365 kb on + strand, within CA264_00925at 198.397 kb on + strand, within CA264_00925at 198.513 kb on + strand, within CA264_00925at 198.514 kb on - strand, within CA264_00925at 198.515 kb on + strand, within CA264_00925at 198.606 kb on + strand, within CA264_00925at 198.606 kb on + strand, within CA264_00925at 198.634 kb on - strand, within CA264_00925at 198.676 kb on - strand, within CA264_00925at 198.676 kb on - strand, within CA264_00925at 198.676 kb on - strand, within CA264_00925at 198.676 kb on - strand, within CA264_00925

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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196,170 - CA264_00915 0.28 -0.2
196,191 + CA264_00915 0.29 -0.4
196,210 - CA264_00915 0.31 -0.1
196,280 + CA264_00915 0.36 -0.6
196,344 - CA264_00915 0.41 -0.8
196,459 - CA264_00915 0.50 -0.9
196,486 - CA264_00915 0.52 -0.4
196,519 - CA264_00915 0.54 -0.4
196,519 - CA264_00915 0.54 -0.2
196,519 - CA264_00915 0.54 +1.2
196,755 - CA264_00915 0.72 -0.2
196,768 - CA264_00915 0.73 -0.0
196,783 + CA264_00915 0.75 +0.4
196,783 + CA264_00915 0.75 -0.7
196,784 - CA264_00915 0.75 +0.7
196,784 - CA264_00915 0.75 -0.2
196,784 - CA264_00915 0.75 -0.1
196,784 - CA264_00915 0.75 -0.1
196,831 - CA264_00915 0.78 -0.0
196,831 - CA264_00915 0.78 -0.2
196,937 - CA264_00915 0.86 -0.6
196,937 - CA264_00915 0.86 +0.3
196,937 - CA264_00915 0.86 +0.5
196,937 - CA264_00915 0.86 -0.2
196,940 + CA264_00915 0.87 -0.1
196,940 + CA264_00915 0.87 -0.1
196,941 - CA264_00915 0.87 +0.1
196,974 - CA264_00915 0.89 +0.1
197,041 + -0.3
197,150 - +0.5
197,180 + -0.3
197,180 + -0.2
197,181 - +0.2
197,181 - -0.4
197,183 + -1.3
197,184 - -0.5
197,184 - -0.0
197,184 - +1.4
197,184 - -0.2
197,184 - -0.6
197,213 + +0.2
197,213 + -0.2
197,213 + +0.8
197,213 + +0.4
197,213 + +0.6
197,214 - +0.1
197,218 - +0.7
197,218 - -0.7
197,218 - -0.7
197,219 + -0.3
197,219 + -0.4
197,220 - +0.2
197,429 + CA264_00920 0.42 -0.5
197,429 + CA264_00920 0.42 -0.5
197,599 + CA264_00920 0.69 -0.2
197,640 + CA264_00920 0.75 +0.0
197,640 + CA264_00920 0.75 +1.1
197,908 + -0.5
197,908 + -0.8
197,909 - -1.3
197,975 - -1.0
197,978 + -0.2
197,990 - -2.5
198,008 + +0.8
198,009 - +0.4
198,028 + -1.3
198,029 - -1.1
198,029 - -1.0
198,036 + -0.5
198,039 + -1.0
198,040 - -0.4
198,040 - +0.2
198,264 - CA264_00925 0.26 -0.8
198,365 + CA264_00925 0.37 -1.0
198,397 + CA264_00925 0.40 -2.7
198,513 + CA264_00925 0.52 -0.4
198,514 - CA264_00925 0.52 -1.1
198,515 + CA264_00925 0.52 -1.2
198,606 + CA264_00925 0.62 -0.9
198,606 + CA264_00925 0.62 -0.0
198,634 - CA264_00925 0.64 +0.4
198,676 - CA264_00925 0.69 -0.7
198,676 - CA264_00925 0.69 -0.0
198,676 - CA264_00925 0.69 -1.4
198,676 - CA264_00925 0.69 -1.3

Or see this region's nucleotide sequence