Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00455 and CA264_00460 are separated by 3 nucleotides CA264_00460 and CA264_00465 are separated by 72 nucleotides CA264_00465 and CA264_00470 are separated by 128 nucleotides
CA264_00455: CA264_00455 - PorT-like protein, at 98,343 to 99,113
_00455
CA264_00460: CA264_00460 - NAD(P)-dependent oxidoreductase, at 99,117 to 99,869
_00460
CA264_00465: CA264_00465 - DNA mismatch repair protein MutT, at 99,942 to 100,340
_00465
CA264_00470: CA264_00470 - hypothetical protein, at 100,469 to 102,061
_00470
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 98.976 kb on + strand, within CA264_00455 at 98.976 kb on + strand, within CA264_00455 at 98.976 kb on + strand, within CA264_00455 at 98.977 kb on - strand, within CA264_00455 at 98.977 kb on - strand, within CA264_00455 at 98.981 kb on + strand, within CA264_00455 at 99.027 kb on + strand, within CA264_00455 at 99.029 kb on + strand, within CA264_00455 at 99.030 kb on - strand, within CA264_00455 at 99.030 kb on - strand, within CA264_00455 at 99.030 kb on - strand, within CA264_00455 at 99.051 kb on + strand at 99.061 kb on - strand at 99.111 kb on + strand at 99.278 kb on + strand, within CA264_00460 at 99.464 kb on - strand, within CA264_00460 at 99.527 kb on + strand, within CA264_00460 at 99.528 kb on - strand, within CA264_00460 at 99.544 kb on + strand, within CA264_00460 at 99.544 kb on + strand, within CA264_00460 at 99.545 kb on - strand, within CA264_00460 at 99.547 kb on - strand, within CA264_00460 at 99.650 kb on - strand, within CA264_00460 at 99.722 kb on - strand, within CA264_00460 at 99.723 kb on + strand, within CA264_00460 at 99.724 kb on - strand, within CA264_00460 at 99.849 kb on - strand at 99.879 kb on + strand at 99.879 kb on + strand at 99.882 kb on - strand at 99.882 kb on - strand at 99.908 kb on + strand at 100.019 kb on - strand, within CA264_00465 at 100.029 kb on + strand, within CA264_00465 at 100.030 kb on - strand, within CA264_00465 at 100.030 kb on - strand, within CA264_00465 at 100.041 kb on + strand, within CA264_00465 at 100.042 kb on - strand, within CA264_00465 at 100.085 kb on - strand, within CA264_00465 at 100.150 kb on + strand, within CA264_00465 at 100.150 kb on + strand, within CA264_00465 at 100.150 kb on + strand, within CA264_00465 at 100.182 kb on + strand, within CA264_00465 at 100.183 kb on - strand, within CA264_00465 at 100.183 kb on - strand, within CA264_00465 at 100.255 kb on + strand, within CA264_00465 at 100.255 kb on + strand, within CA264_00465 at 100.256 kb on - strand, within CA264_00465 at 100.290 kb on + strand, within CA264_00465 at 100.290 kb on + strand, within CA264_00465 at 100.305 kb on + strand at 100.306 kb on - strand at 100.325 kb on + strand at 100.329 kb on + strand at 100.329 kb on + strand at 100.331 kb on + strand at 100.332 kb on - strand at 100.346 kb on + strand at 100.346 kb on + strand at 100.346 kb on + strand at 100.347 kb on - strand at 100.351 kb on + strand at 100.352 kb on - strand at 100.377 kb on + strand at 100.396 kb on + strand at 100.503 kb on - strand at 100.565 kb on - strand at 100.569 kb on + strand at 100.569 kb on + strand at 100.570 kb on - strand at 100.570 kb on - strand at 100.610 kb on - strand at 100.741 kb on + strand, within CA264_00470 at 100.742 kb on - strand, within CA264_00470 at 100.756 kb on - strand, within CA264_00470 at 100.791 kb on - strand, within CA264_00470 at 100.875 kb on - strand, within CA264_00470 at 100.882 kb on - strand, within CA264_00470 at 100.882 kb on - strand, within CA264_00470 at 100.882 kb on - strand, within CA264_00470 at 100.959 kb on + strand, within CA264_00470 at 101.057 kb on + strand, within CA264_00470 at 101.078 kb on - strand, within CA264_00470 at 101.078 kb on - strand, within CA264_00470 at 101.081 kb on + strand, within CA264_00470 at 101.241 kb on + strand, within CA264_00470 at 101.262 kb on + strand, within CA264_00470 at 101.263 kb on - strand, within CA264_00470 at 101.306 kb on + strand, within CA264_00470 at 101.306 kb on + strand, within CA264_00470 at 101.307 kb on - strand, within CA264_00470 at 101.307 kb on - strand, within CA264_00470
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 98,976 + CA264_00455 0.82 -0.9 98,976 + CA264_00455 0.82 -1.2 98,976 + CA264_00455 0.82 -0.3 98,977 - CA264_00455 0.82 -1.0 98,977 - CA264_00455 0.82 -1.1 98,981 + CA264_00455 0.83 +0.1 99,027 + CA264_00455 0.89 -1.0 99,029 + CA264_00455 0.89 -1.3 99,030 - CA264_00455 0.89 +0.1 99,030 - CA264_00455 0.89 -1.4 99,030 - CA264_00455 0.89 -1.9 99,051 + +1.2 99,061 - -1.7 99,111 + +0.1 99,278 + CA264_00460 0.21 +1.1 99,464 - CA264_00460 0.46 -0.3 99,527 + CA264_00460 0.54 +0.1 99,528 - CA264_00460 0.55 -0.2 99,544 + CA264_00460 0.57 -0.3 99,544 + CA264_00460 0.57 +2.0 99,545 - CA264_00460 0.57 +0.3 99,547 - CA264_00460 0.57 -0.3 99,650 - CA264_00460 0.71 -0.3 99,722 - CA264_00460 0.80 -0.3 99,723 + CA264_00460 0.80 -0.6 99,724 - CA264_00460 0.81 +0.1 99,849 - -1.8 99,879 + +0.8 99,879 + +1.2 99,882 - -0.2 99,882 - -0.0 99,908 + -0.5 100,019 - CA264_00465 0.19 +0.2 100,029 + CA264_00465 0.22 +0.3 100,030 - CA264_00465 0.22 +0.7 100,030 - CA264_00465 0.22 +0.5 100,041 + CA264_00465 0.25 -0.2 100,042 - CA264_00465 0.25 -3.3 100,085 - CA264_00465 0.36 +0.1 100,150 + CA264_00465 0.52 +0.2 100,150 + CA264_00465 0.52 +0.8 100,150 + CA264_00465 0.52 -0.6 100,182 + CA264_00465 0.60 +0.2 100,183 - CA264_00465 0.60 +0.3 100,183 - CA264_00465 0.60 -1.2 100,255 + CA264_00465 0.78 +0.6 100,255 + CA264_00465 0.78 -0.6 100,256 - CA264_00465 0.79 +0.1 100,290 + CA264_00465 0.87 -0.7 100,290 + CA264_00465 0.87 +0.6 100,305 + +0.0 100,306 - -0.2 100,325 + +0.0 100,329 + +0.6 100,329 + -0.4 100,331 + -0.9 100,332 - -0.6 100,346 + +0.3 100,346 + -0.9 100,346 + -0.2 100,347 - -0.8 100,351 + -0.1 100,352 - +0.6 100,377 + -0.7 100,396 + -0.3 100,503 - +0.1 100,565 - +0.3 100,569 + -0.1 100,569 + -0.5 100,570 - +0.4 100,570 - -0.0 100,610 - +0.5 100,741 + CA264_00470 0.17 +0.7 100,742 - CA264_00470 0.17 -0.5 100,756 - CA264_00470 0.18 -0.3 100,791 - CA264_00470 0.20 -0.3 100,875 - CA264_00470 0.25 +0.5 100,882 - CA264_00470 0.26 -0.3 100,882 - CA264_00470 0.26 +0.7 100,882 - CA264_00470 0.26 -0.3 100,959 + CA264_00470 0.31 +0.6 101,057 + CA264_00470 0.37 +0.1 101,078 - CA264_00470 0.38 -0.6 101,078 - CA264_00470 0.38 +0.8 101,081 + CA264_00470 0.38 -0.6 101,241 + CA264_00470 0.48 -0.9 101,262 + CA264_00470 0.50 +0.1 101,263 - CA264_00470 0.50 -0.5 101,306 + CA264_00470 0.53 -1.0 101,306 + CA264_00470 0.53 -0.8 101,307 - CA264_00470 0.53 -0.3 101,307 - CA264_00470 0.53 +1.6
Or see this region's nucleotide sequence