Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00205 and CA264_00210 are separated by 327 nucleotides CA264_00210 and CA264_00215 are separated by 78 nucleotides CA264_00215 and CA264_00220 are separated by 32 nucleotides
CA264_00205: CA264_00205 - histidine kinase, at 52,104 to 53,585
_00205
CA264_00210: CA264_00210 - glycine cleavage system protein T, at 53,913 to 55,001
_00210
CA264_00215: CA264_00215 - 2-phosphosulfolactate phosphatase, at 55,080 to 55,802
_00215
CA264_00220: CA264_00220 - pyrophosphatase, at 55,835 to 56,161
_00220
Position (kb) 53
54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.932 kb on + strand, within CA264_00205 at 52.933 kb on - strand, within CA264_00205 at 52.958 kb on + strand, within CA264_00205 at 52.958 kb on + strand, within CA264_00205 at 52.959 kb on - strand, within CA264_00205 at 52.959 kb on - strand, within CA264_00205 at 52.963 kb on + strand, within CA264_00205 at 52.964 kb on - strand, within CA264_00205 at 52.964 kb on - strand, within CA264_00205 at 52.964 kb on - strand, within CA264_00205 at 52.966 kb on + strand, within CA264_00205 at 52.966 kb on + strand, within CA264_00205 at 53.034 kb on + strand, within CA264_00205 at 53.035 kb on - strand, within CA264_00205 at 53.036 kb on + strand, within CA264_00205 at 53.036 kb on + strand, within CA264_00205 at 53.036 kb on + strand, within CA264_00205 at 53.036 kb on + strand, within CA264_00205 at 53.045 kb on + strand, within CA264_00205 at 53.182 kb on - strand, within CA264_00205 at 53.227 kb on + strand, within CA264_00205 at 53.227 kb on + strand, within CA264_00205 at 53.354 kb on - strand, within CA264_00205 at 53.423 kb on + strand, within CA264_00205 at 53.423 kb on + strand, within CA264_00205 at 53.454 kb on + strand at 53.589 kb on + strand at 53.589 kb on + strand at 53.605 kb on - strand at 53.643 kb on + strand at 53.643 kb on + strand at 53.644 kb on - strand at 53.646 kb on - strand at 53.646 kb on - strand at 53.681 kb on + strand at 53.738 kb on - strand at 53.743 kb on + strand at 53.743 kb on + strand at 53.743 kb on + strand at 53.743 kb on + strand at 53.744 kb on - strand at 53.744 kb on - strand at 53.744 kb on - strand at 53.744 kb on - strand at 53.744 kb on - strand at 53.763 kb on + strand at 53.763 kb on + strand at 53.763 kb on + strand at 53.764 kb on - strand at 53.764 kb on - strand at 53.771 kb on - strand at 53.787 kb on - strand at 53.787 kb on - strand at 53.787 kb on - strand at 54.962 kb on - strand at 54.986 kb on + strand at 54.986 kb on + strand at 54.993 kb on - strand at 55.037 kb on - strand at 55.091 kb on - strand at 55.091 kb on - strand at 55.774 kb on + strand at 55.858 kb on + strand at 55.962 kb on - strand, within CA264_00220 at 55.962 kb on - strand, within CA264_00220
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 52,932 + CA264_00205 0.56 +0.2 52,933 - CA264_00205 0.56 +1.0 52,958 + CA264_00205 0.58 +0.2 52,958 + CA264_00205 0.58 +0.3 52,959 - CA264_00205 0.58 +0.8 52,959 - CA264_00205 0.58 -0.3 52,963 + CA264_00205 0.58 +0.6 52,964 - CA264_00205 0.58 +2.2 52,964 - CA264_00205 0.58 +0.2 52,964 - CA264_00205 0.58 -0.3 52,966 + CA264_00205 0.58 -0.2 52,966 + CA264_00205 0.58 +0.2 53,034 + CA264_00205 0.63 +0.8 53,035 - CA264_00205 0.63 -0.5 53,036 + CA264_00205 0.63 -0.0 53,036 + CA264_00205 0.63 +0.5 53,036 + CA264_00205 0.63 +0.9 53,036 + CA264_00205 0.63 -0.3 53,045 + CA264_00205 0.63 +0.1 53,182 - CA264_00205 0.73 +1.1 53,227 + CA264_00205 0.76 -0.8 53,227 + CA264_00205 0.76 +0.2 53,354 - CA264_00205 0.84 +1.8 53,423 + CA264_00205 0.89 -0.3 53,423 + CA264_00205 0.89 -0.3 53,454 + +1.0 53,589 + +1.4 53,589 + +0.0 53,605 - +0.0 53,643 + +0.8 53,643 + +0.5 53,644 - +0.4 53,646 - -0.3 53,646 - +0.3 53,681 + +0.2 53,738 - +0.3 53,743 + +0.1 53,743 + +0.6 53,743 + -0.3 53,743 + +0.2 53,744 - +0.1 53,744 - +0.6 53,744 - +0.2 53,744 - -0.1 53,744 - -0.2 53,763 + -0.9 53,763 + -0.1 53,763 + +0.4 53,764 - +0.1 53,764 - +0.4 53,771 - +0.4 53,787 - +1.2 53,787 - -0.4 53,787 - +0.8 54,962 - -0.8 54,986 + -0.2 54,986 + -0.2 54,993 - -1.2 55,037 - +0.2 55,091 - -0.2 55,091 - +0.5 55,774 + -0.0 55,858 + -2.4 55,962 - CA264_00220 0.39 -0.4 55,962 - CA264_00220 0.39 -0.0
Or see this region's nucleotide sequence