Strain Fitness in Agrobacterium fabrum C58 around Atu6059

Experiment: Ethanolamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6057 and Atu6058 overlap by 4 nucleotidesAtu6058 and Atu6059 are separated by 26 nucleotidesAtu6059 and Atu6060 are separated by 170 nucleotides Atu6057: Atu6057 - ABC transporter, membrane spanning protein (nitrate/sulfonates), at 68,748 to 69,689 Atu6057 Atu6058: Atu6058 - ABC transporter, nucleotide binding/ATPase protein (nitrate/sulfonates), at 69,686 to 70,489 Atu6058 Atu6059: Atu6059 - ABC transporter, substrate binding protein (nitrate/sulfonate), at 70,516 to 71,478 Atu6059 Atu6060: Atu6060 - nitrilotriacetate monooxygenase, at 71,649 to 72,524 Atu6060 Position (kb) 70 71 72Strain fitness (log2 ratio) -1 0 1 2 3at 69.534 kb on + strand, within Atu6057at 69.600 kb on + strandat 69.628 kb on + strandat 69.630 kb on + strandat 69.638 kb on - strandat 69.717 kb on + strandat 69.741 kb on + strandat 69.754 kb on + strandat 69.762 kb on - strandat 69.792 kb on + strand, within Atu6058at 69.800 kb on - strand, within Atu6058at 69.806 kb on + strand, within Atu6058at 69.806 kb on + strand, within Atu6058at 69.806 kb on + strand, within Atu6058at 69.807 kb on + strand, within Atu6058at 69.811 kb on + strand, within Atu6058at 69.814 kb on - strand, within Atu6058at 69.814 kb on - strand, within Atu6058at 69.863 kb on - strand, within Atu6058at 69.922 kb on - strand, within Atu6058at 69.934 kb on + strand, within Atu6058at 69.965 kb on + strand, within Atu6058at 69.968 kb on - strand, within Atu6058at 69.974 kb on - strand, within Atu6058at 70.024 kb on + strand, within Atu6058at 70.024 kb on + strand, within Atu6058at 70.032 kb on - strand, within Atu6058at 70.033 kb on + strand, within Atu6058at 70.090 kb on + strand, within Atu6058at 70.121 kb on - strand, within Atu6058at 70.121 kb on - strand, within Atu6058at 70.131 kb on - strand, within Atu6058at 70.131 kb on - strand, within Atu6058at 70.149 kb on - strand, within Atu6058at 70.157 kb on - strand, within Atu6058at 70.204 kb on - strand, within Atu6058at 70.395 kb on + strand, within Atu6058at 70.400 kb on + strand, within Atu6058at 70.403 kb on - strand, within Atu6058at 70.408 kb on - strand, within Atu6058at 70.557 kb on - strandat 70.569 kb on + strandat 70.569 kb on + strandat 70.569 kb on + strandat 70.569 kb on + strandat 70.577 kb on - strandat 70.677 kb on - strand, within Atu6059at 70.775 kb on + strand, within Atu6059at 70.775 kb on - strand, within Atu6059at 70.776 kb on - strand, within Atu6059at 70.783 kb on - strand, within Atu6059at 70.785 kb on + strand, within Atu6059at 70.809 kb on - strand, within Atu6059at 70.809 kb on - strand, within Atu6059at 70.857 kb on + strand, within Atu6059at 70.865 kb on - strand, within Atu6059at 70.865 kb on - strand, within Atu6059at 70.882 kb on + strand, within Atu6059at 70.887 kb on + strand, within Atu6059at 70.928 kb on - strand, within Atu6059at 70.936 kb on + strand, within Atu6059at 70.936 kb on + strand, within Atu6059at 70.936 kb on + strand, within Atu6059at 70.939 kb on - strand, within Atu6059at 70.973 kb on - strand, within Atu6059at 71.042 kb on + strand, within Atu6059at 71.050 kb on - strand, within Atu6059at 71.052 kb on + strand, within Atu6059at 71.052 kb on + strand, within Atu6059at 71.082 kb on - strand, within Atu6059at 71.111 kb on + strand, within Atu6059at 71.123 kb on + strand, within Atu6059at 71.129 kb on - strand, within Atu6059at 71.154 kb on + strand, within Atu6059at 71.154 kb on + strand, within Atu6059at 71.162 kb on - strand, within Atu6059at 71.184 kb on - strand, within Atu6059at 71.184 kb on - strand, within Atu6059at 71.184 kb on - strand, within Atu6059at 71.273 kb on + strand, within Atu6059at 71.286 kb on - strand, within Atu6059at 71.286 kb on - strand, within Atu6059at 71.286 kb on - strand, within Atu6059at 71.286 kb on - strand, within Atu6059at 71.309 kb on + strand, within Atu6059at 71.331 kb on - strand, within Atu6059at 71.378 kb on - strand, within Atu6059at 71.432 kb on + strandat 71.440 kb on - strandat 71.455 kb on + strandat 71.514 kb on + strandat 71.536 kb on - strandat 71.597 kb on - strandat 71.610 kb on + strandat 71.647 kb on - strandat 71.661 kb on - strandat 71.671 kb on + strandat 71.672 kb on - strandat 71.684 kb on - strandat 71.689 kb on - strandat 71.794 kb on + strand, within Atu6060at 71.816 kb on + strand, within Atu6060at 71.824 kb on - strand, within Atu6060at 71.829 kb on - strand, within Atu6060at 71.839 kb on - strand, within Atu6060at 71.863 kb on - strand, within Atu6060at 71.865 kb on + strand, within Atu6060at 71.870 kb on + strand, within Atu6060at 71.899 kb on + strand, within Atu6060at 71.907 kb on - strand, within Atu6060at 71.907 kb on - strand, within Atu6060at 71.909 kb on + strand, within Atu6060at 71.909 kb on + strand, within Atu6060at 71.917 kb on - strand, within Atu6060at 71.956 kb on + strand, within Atu6060at 71.957 kb on + strand, within Atu6060at 71.965 kb on - strand, within Atu6060at 71.992 kb on + strand, within Atu6060at 72.003 kb on + strand, within Atu6060at 72.003 kb on + strand, within Atu6060at 72.011 kb on - strand, within Atu6060at 72.011 kb on - strand, within Atu6060at 72.011 kb on - strand, within Atu6060at 72.011 kb on - strand, within Atu6060at 72.013 kb on + strand, within Atu6060at 72.068 kb on + strand, within Atu6060at 72.082 kb on + strand, within Atu6060at 72.122 kb on + strand, within Atu6060at 72.122 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.141 kb on + strand, within Atu6060at 72.149 kb on - strand, within Atu6060at 72.164 kb on - strand, within Atu6060at 72.164 kb on - strand, within Atu6060at 72.170 kb on + strand, within Atu6060at 72.178 kb on + strand, within Atu6060at 72.278 kb on + strand, within Atu6060at 72.278 kb on + strand, within Atu6060at 72.299 kb on - strand, within Atu6060at 72.341 kb on + strand, within Atu6060at 72.341 kb on + strand, within Atu6060at 72.341 kb on + strand, within Atu6060at 72.341 kb on + strand, within Atu6060at 72.341 kb on + strand, within Atu6060at 72.347 kb on - strand, within Atu6060at 72.349 kb on - strand, within Atu6060at 72.389 kb on + strand, within Atu6060at 72.411 kb on + strand, within Atu6060at 72.418 kb on + strand, within Atu6060at 72.430 kb on + strand, within Atu6060at 72.431 kb on - strand, within Atu6060at 72.438 kb on - strandat 72.438 kb on - strandat 72.438 kb on - strandat 72.476 kb on - strandat 72.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
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69,534 + Atu6057 0.83 +0.9
69,600 + -0.1
69,628 + +1.6
69,630 + +0.6
69,638 - +0.5
69,717 + +0.1
69,741 + +1.0
69,754 + +1.3
69,762 - -0.2
69,792 + Atu6058 0.13 +0.7
69,800 - Atu6058 0.14 +0.1
69,806 + Atu6058 0.15 +1.2
69,806 + Atu6058 0.15 +0.2
69,806 + Atu6058 0.15 +0.6
69,807 + Atu6058 0.15 +0.1
69,811 + Atu6058 0.16 +0.5
69,814 - Atu6058 0.16 +0.9
69,814 - Atu6058 0.16 -0.4
69,863 - Atu6058 0.22 +1.2
69,922 - Atu6058 0.29 +3.0
69,934 + Atu6058 0.31 -0.6
69,965 + Atu6058 0.35 +1.0
69,968 - Atu6058 0.35 -0.1
69,974 - Atu6058 0.36 +0.4
70,024 + Atu6058 0.42 +1.2
70,024 + Atu6058 0.42 +0.1
70,032 - Atu6058 0.43 +0.4
70,033 + Atu6058 0.43 +0.3
70,090 + Atu6058 0.50 -0.9
70,121 - Atu6058 0.54 +1.1
70,121 - Atu6058 0.54 +0.7
70,131 - Atu6058 0.55 -0.6
70,131 - Atu6058 0.55 +0.2
70,149 - Atu6058 0.58 +0.6
70,157 - Atu6058 0.59 +1.5
70,204 - Atu6058 0.64 -1.1
70,395 + Atu6058 0.88 -0.2
70,400 + Atu6058 0.89 +0.9
70,403 - Atu6058 0.89 -0.3
70,408 - Atu6058 0.90 -0.9
70,557 - -0.0
70,569 + +0.2
70,569 + +0.2
70,569 + +0.2
70,569 + +0.3
70,577 - +1.6
70,677 - Atu6059 0.17 -0.3
70,775 + Atu6059 0.27 +1.6
70,775 - Atu6059 0.27 +0.2
70,776 - Atu6059 0.27 +1.5
70,783 - Atu6059 0.28 -0.1
70,785 + Atu6059 0.28 +0.2
70,809 - Atu6059 0.30 +0.4
70,809 - Atu6059 0.30 -0.6
70,857 + Atu6059 0.35 -0.2
70,865 - Atu6059 0.36 -0.3
70,865 - Atu6059 0.36 -1.2
70,882 + Atu6059 0.38 +1.2
70,887 + Atu6059 0.39 -0.3
70,928 - Atu6059 0.43 -0.1
70,936 + Atu6059 0.44 -0.0
70,936 + Atu6059 0.44 +0.7
70,936 + Atu6059 0.44 -1.1
70,939 - Atu6059 0.44 -0.7
70,973 - Atu6059 0.47 -0.6
71,042 + Atu6059 0.55 +1.2
71,050 - Atu6059 0.55 +0.6
71,052 + Atu6059 0.56 -0.4
71,052 + Atu6059 0.56 +0.2
71,082 - Atu6059 0.59 -0.8
71,111 + Atu6059 0.62 +0.0
71,123 + Atu6059 0.63 +0.3
71,129 - Atu6059 0.64 -0.1
71,154 + Atu6059 0.66 -0.5
71,154 + Atu6059 0.66 +0.1
71,162 - Atu6059 0.67 +1.9
71,184 - Atu6059 0.69 -0.9
71,184 - Atu6059 0.69 -0.7
71,184 - Atu6059 0.69 -0.3
71,273 + Atu6059 0.79 +2.2
71,286 - Atu6059 0.80 +0.9
71,286 - Atu6059 0.80 +0.5
71,286 - Atu6059 0.80 +2.2
71,286 - Atu6059 0.80 +0.3
71,309 + Atu6059 0.82 -0.3
71,331 - Atu6059 0.85 -0.2
71,378 - Atu6059 0.90 +2.2
71,432 + +0.2
71,440 - -0.1
71,455 + -0.1
71,514 + +1.0
71,536 - +1.3
71,597 - +0.7
71,610 + +0.4
71,647 - +0.2
71,661 - -0.1
71,671 + +0.0
71,672 - -1.1
71,684 - -0.5
71,689 - +0.9
71,794 + Atu6060 0.17 -0.1
71,816 + Atu6060 0.19 +0.9
71,824 - Atu6060 0.20 +0.9
71,829 - Atu6060 0.21 +1.1
71,839 - Atu6060 0.22 +1.3
71,863 - Atu6060 0.24 +2.0
71,865 + Atu6060 0.25 +0.4
71,870 + Atu6060 0.25 -0.0
71,899 + Atu6060 0.29 +0.4
71,907 - Atu6060 0.29 +0.4
71,907 - Atu6060 0.29 +0.4
71,909 + Atu6060 0.30 -0.3
71,909 + Atu6060 0.30 +0.1
71,917 - Atu6060 0.31 +0.6
71,956 + Atu6060 0.35 +0.5
71,957 + Atu6060 0.35 -0.6
71,965 - Atu6060 0.36 -0.5
71,992 + Atu6060 0.39 -0.2
72,003 + Atu6060 0.40 +1.2
72,003 + Atu6060 0.40 +0.1
72,011 - Atu6060 0.41 +0.4
72,011 - Atu6060 0.41 +1.6
72,011 - Atu6060 0.41 +0.2
72,011 - Atu6060 0.41 +0.4
72,013 + Atu6060 0.42 +0.3
72,068 + Atu6060 0.48 +0.4
72,082 + Atu6060 0.49 +0.0
72,122 + Atu6060 0.54 +0.8
72,122 + Atu6060 0.54 -0.1
72,141 + Atu6060 0.56 -0.7
72,141 + Atu6060 0.56 +0.1
72,141 + Atu6060 0.56 -0.3
72,141 + Atu6060 0.56 +0.2
72,141 + Atu6060 0.56 +1.2
72,141 + Atu6060 0.56 -0.2
72,141 + Atu6060 0.56 -0.2
72,149 - Atu6060 0.57 +0.0
72,164 - Atu6060 0.59 +0.9
72,164 - Atu6060 0.59 -0.3
72,170 + Atu6060 0.59 +1.2
72,178 + Atu6060 0.60 +0.2
72,278 + Atu6060 0.72 -0.2
72,278 + Atu6060 0.72 +0.9
72,299 - Atu6060 0.74 +0.7
72,341 + Atu6060 0.79 +0.3
72,341 + Atu6060 0.79 +1.8
72,341 + Atu6060 0.79 +2.8
72,341 + Atu6060 0.79 +1.2
72,341 + Atu6060 0.79 +2.3
72,347 - Atu6060 0.80 -0.2
72,349 - Atu6060 0.80 +0.9
72,389 + Atu6060 0.84 -1.0
72,411 + Atu6060 0.87 +0.6
72,418 + Atu6060 0.88 +0.6
72,430 + Atu6060 0.89 +1.6
72,431 - Atu6060 0.89 -1.2
72,438 - -1.3
72,438 - +1.1
72,438 - +1.8
72,476 - +0.2
72,476 - +0.3

Or see this region's nucleotide sequence