Experiment: KB with Acridine orange 3.125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4988 and Psyr_4989 overlap by 13 nucleotides Psyr_4989 and Psyr_4990 are separated by 246 nucleotides
Psyr_4988: Psyr_4988 - YD repeat protein, at 5,916,253 to 5,917,695
_4988
Psyr_4989: Psyr_4989 - hypothetical protein, at 5,917,683 to 5,918,153
_4989
Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003
_4990
Position (kb) 5917
5918
5919 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 5916.778 kb on + strand, within Psyr_4988 at 5916.858 kb on + strand, within Psyr_4988 at 5917.037 kb on + strand, within Psyr_4988 at 5917.228 kb on + strand, within Psyr_4988 at 5917.272 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.319 kb on - strand, within Psyr_4988 at 5917.319 kb on - strand, within Psyr_4988 at 5917.319 kb on - strand, within Psyr_4988 at 5917.319 kb on - strand, within Psyr_4988 at 5917.380 kb on + strand, within Psyr_4988 at 5917.423 kb on + strand, within Psyr_4988 at 5917.424 kb on - strand, within Psyr_4988 at 5917.424 kb on - strand, within Psyr_4988 at 5917.488 kb on - strand, within Psyr_4988 at 5917.516 kb on - strand, within Psyr_4988 at 5917.542 kb on + strand, within Psyr_4988 at 5917.548 kb on + strand, within Psyr_4988 at 5917.548 kb on + strand, within Psyr_4988 at 5917.549 kb on - strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.551 kb on - strand at 5917.551 kb on - strand at 5917.551 kb on - strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.578 kb on - strand at 5917.578 kb on - strand at 5917.578 kb on - strand at 5917.650 kb on + strand at 5917.651 kb on - strand at 5917.651 kb on - strand at 5917.659 kb on - strand at 5917.659 kb on - strand at 5917.659 kb on - strand at 5917.662 kb on + strand at 5917.663 kb on - strand at 5917.737 kb on + strand, within Psyr_4989 at 5917.738 kb on - strand, within Psyr_4989 at 5917.738 kb on - strand, within Psyr_4989 at 5917.766 kb on + strand, within Psyr_4989 at 5917.766 kb on + strand, within Psyr_4989 at 5917.824 kb on - strand, within Psyr_4989 at 5917.855 kb on + strand, within Psyr_4989 at 5917.900 kb on + strand, within Psyr_4989 at 5917.906 kb on + strand, within Psyr_4989 at 5917.906 kb on + strand, within Psyr_4989 at 5917.985 kb on - strand, within Psyr_4989 at 5918.024 kb on - strand, within Psyr_4989 at 5918.126 kb on - strand at 5918.287 kb on + strand at 5918.287 kb on + strand at 5918.288 kb on - strand at 5918.291 kb on + strand at 5918.359 kb on + strand at 5918.359 kb on + strand at 5918.361 kb on + strand at 5918.362 kb on - strand at 5918.375 kb on + strand at 5918.411 kb on + strand at 5918.412 kb on - strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.559 kb on + strand at 5918.676 kb on + strand, within Psyr_4990 at 5918.676 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.923 kb on + strand, within Psyr_4990 at 5918.923 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 3.125 ug/ml remove 5,916,778 + Psyr_4988 0.36 +0.1 5,916,858 + Psyr_4988 0.42 -1.5 5,917,037 + Psyr_4988 0.54 +4.8 5,917,228 + Psyr_4988 0.68 +1.1 5,917,272 + Psyr_4988 0.71 -1.2 5,917,318 + Psyr_4988 0.74 +3.6 5,917,318 + Psyr_4988 0.74 -0.3 5,917,318 + Psyr_4988 0.74 -1.6 5,917,318 + Psyr_4988 0.74 -3.4 5,917,318 + Psyr_4988 0.74 -1.2 5,917,319 - Psyr_4988 0.74 -1.1 5,917,319 - Psyr_4988 0.74 +2.6 5,917,319 - Psyr_4988 0.74 -1.0 5,917,319 - Psyr_4988 0.74 -1.0 5,917,380 + Psyr_4988 0.78 -2.0 5,917,423 + Psyr_4988 0.81 -2.5 5,917,424 - Psyr_4988 0.81 +0.9 5,917,424 - Psyr_4988 0.81 +0.6 5,917,488 - Psyr_4988 0.86 -2.4 5,917,516 - Psyr_4988 0.88 -5.5 5,917,542 + Psyr_4988 0.89 +1.2 5,917,548 + Psyr_4988 0.90 +0.5 5,917,548 + Psyr_4988 0.90 -3.8 5,917,549 - Psyr_4988 0.90 -2.5 5,917,550 + Psyr_4988 0.90 +1.8 5,917,550 + Psyr_4988 0.90 +2.4 5,917,550 + Psyr_4988 0.90 -0.2 5,917,550 + Psyr_4988 0.90 -5.2 5,917,550 + Psyr_4988 0.90 +1.1 5,917,551 - +2.2 5,917,551 - +0.6 5,917,551 - +0.6 5,917,577 + -1.2 5,917,577 + +0.6 5,917,577 + -1.7 5,917,577 + -0.2 5,917,578 - +0.3 5,917,578 - -1.7 5,917,578 - +4.1 5,917,650 + -1.0 5,917,651 - -0.8 5,917,651 - -1.7 5,917,659 - -0.9 5,917,659 - +1.9 5,917,659 - +0.6 5,917,662 + +0.4 5,917,663 - -2.6 5,917,737 + Psyr_4989 0.11 -2.2 5,917,738 - Psyr_4989 0.12 -4.0 5,917,738 - Psyr_4989 0.12 -4.7 5,917,766 + Psyr_4989 0.18 +2.9 5,917,766 + Psyr_4989 0.18 +0.6 5,917,824 - Psyr_4989 0.30 -4.8 5,917,855 + Psyr_4989 0.37 -2.5 5,917,900 + Psyr_4989 0.46 -1.6 5,917,906 + Psyr_4989 0.47 -2.7 5,917,906 + Psyr_4989 0.47 -0.4 5,917,985 - Psyr_4989 0.64 +0.6 5,918,024 - Psyr_4989 0.72 -1.9 5,918,126 - -2.2 5,918,287 + +0.7 5,918,287 + +0.4 5,918,288 - -0.9 5,918,291 + +1.5 5,918,359 + +2.2 5,918,359 + -0.0 5,918,361 + -0.0 5,918,362 - +0.6 5,918,375 + +0.7 5,918,411 + +0.2 5,918,412 - +0.6 5,918,487 + -2.2 5,918,487 + +0.1 5,918,487 + +1.7 5,918,487 + +0.1 5,918,487 + -0.6 5,918,488 - -1.1 5,918,488 - -1.7 5,918,488 - -1.4 5,918,559 + -4.4 5,918,676 + Psyr_4990 0.11 +0.1 5,918,676 + Psyr_4990 0.11 -2.9 5,918,739 + Psyr_4990 0.13 -3.4 5,918,739 + Psyr_4990 0.13 -4.4 5,918,739 + Psyr_4990 0.13 -1.1 5,918,739 + Psyr_4990 0.13 -2.7 5,918,739 + Psyr_4990 0.13 -1.3 5,918,739 + Psyr_4990 0.13 -0.6 5,918,739 + Psyr_4990 0.13 +3.6 5,918,739 + Psyr_4990 0.13 -1.1 5,918,739 + Psyr_4990 0.13 -0.9 5,918,740 - Psyr_4990 0.13 +2.5 5,918,740 - Psyr_4990 0.13 +1.9 5,918,740 - Psyr_4990 0.13 -0.0 5,918,740 - Psyr_4990 0.13 +2.1 5,918,740 - Psyr_4990 0.13 -0.2 5,918,874 + Psyr_4990 0.18 +2.3 5,918,874 + Psyr_4990 0.18 -0.4 5,918,874 + Psyr_4990 0.18 -2.7 5,918,874 + Psyr_4990 0.18 -0.6 5,918,874 + Psyr_4990 0.18 -0.3 5,918,874 + Psyr_4990 0.18 -1.4 5,918,874 + Psyr_4990 0.18 +0.0 5,918,874 + Psyr_4990 0.18 -3.1 5,918,874 + Psyr_4990 0.18 -1.2 5,918,875 - Psyr_4990 0.18 -0.4 5,918,875 - Psyr_4990 0.18 +4.1 5,918,875 - Psyr_4990 0.18 +2.2 5,918,875 - Psyr_4990 0.18 +0.5 5,918,875 - Psyr_4990 0.18 +0.6 5,918,875 - Psyr_4990 0.18 -1.4 5,918,875 - Psyr_4990 0.18 -0.1 5,918,875 - Psyr_4990 0.18 -0.9 5,918,923 + Psyr_4990 0.20 -1.4 5,918,923 + Psyr_4990 0.20 +0.3 5,919,051 + Psyr_4990 0.25 -0.4 5,919,051 + Psyr_4990 0.25 -0.6 5,919,051 + Psyr_4990 0.25 -0.5 5,919,051 + Psyr_4990 0.25 +0.4 5,919,051 + Psyr_4990 0.25 +0.7 5,919,051 + Psyr_4990 0.25 -0.5 5,919,052 - Psyr_4990 0.25 -0.4 5,919,052 - Psyr_4990 0.25 +3.2 5,919,052 - Psyr_4990 0.25 -0.9 5,919,052 - Psyr_4990 0.25 -1.9 5,919,052 - Psyr_4990 0.25 -2.9 5,919,052 - Psyr_4990 0.25 +0.8 5,919,052 - Psyr_4990 0.25 -0.4 5,919,052 - Psyr_4990 0.25 +0.0 5,919,052 - Psyr_4990 0.25 +0.1 5,919,052 - Psyr_4990 0.25 +3.2
Or see this region's nucleotide sequence