Experiment: KB with Acridine orange 3.125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4697 and Psyr_4698 are separated by 530 nucleotides Psyr_4698 and Psyr_4699 are separated by 197 nucleotides
Psyr_4697: Psyr_4697 - Aminoglycoside phosphotransferase, at 5,565,639 to 5,566,613
_4697
Psyr_4698: Psyr_4698 - RarD protein, at 5,567,144 to 5,568,031
_4698
Psyr_4699: Psyr_4699 - Amino acid-binding ACT, at 5,568,229 to 5,568,771
_4699
Position (kb) 5567
5568
5569 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5566.149 kb on + strand, within Psyr_4697 at 5566.323 kb on - strand, within Psyr_4697 at 5566.389 kb on + strand, within Psyr_4697 at 5566.774 kb on + strand at 5566.774 kb on + strand at 5566.782 kb on + strand at 5566.782 kb on + strand at 5566.782 kb on + strand at 5566.783 kb on - strand at 5566.787 kb on - strand at 5566.833 kb on + strand at 5566.834 kb on - strand at 5566.834 kb on - strand at 5566.834 kb on - strand at 5566.838 kb on - strand at 5566.838 kb on - strand at 5566.838 kb on - strand at 5566.976 kb on + strand at 5566.976 kb on + strand at 5567.049 kb on + strand at 5567.049 kb on + strand at 5567.049 kb on + strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.052 kb on - strand at 5567.052 kb on - strand at 5567.052 kb on - strand at 5567.076 kb on - strand at 5567.109 kb on + strand at 5567.110 kb on - strand at 5567.110 kb on - strand at 5567.172 kb on - strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.219 kb on + strand at 5567.219 kb on + strand at 5567.219 kb on + strand at 5567.219 kb on + strand at 5567.220 kb on - strand at 5567.220 kb on - strand at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.634 kb on - strand, within Psyr_4698 at 5567.883 kb on - strand, within Psyr_4698 at 5567.925 kb on - strand, within Psyr_4698 at 5567.990 kb on + strand at 5567.990 kb on + strand at 5567.990 kb on + strand at 5567.990 kb on + strand at 5567.990 kb on + strand at 5567.990 kb on + strand at 5567.990 kb on + strand at 5567.991 kb on - strand at 5567.991 kb on - strand at 5567.991 kb on - strand at 5567.991 kb on - strand at 5567.991 kb on - strand at 5568.048 kb on + strand at 5568.049 kb on - strand at 5568.049 kb on - strand at 5568.049 kb on - strand at 5568.049 kb on - strand at 5568.117 kb on + strand at 5568.196 kb on - strand at 5568.376 kb on + strand, within Psyr_4699 at 5568.376 kb on + strand, within Psyr_4699 at 5568.376 kb on + strand, within Psyr_4699 at 5568.376 kb on + strand, within Psyr_4699 at 5568.376 kb on + strand, within Psyr_4699 at 5568.376 kb on + strand, within Psyr_4699 at 5568.377 kb on - strand, within Psyr_4699 at 5568.377 kb on - strand, within Psyr_4699 at 5568.377 kb on - strand, within Psyr_4699 at 5568.819 kb on + strand at 5568.820 kb on - strand at 5568.820 kb on - strand at 5568.820 kb on - strand at 5568.820 kb on - strand at 5568.825 kb on + strand at 5568.826 kb on - strand at 5568.826 kb on - strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.828 kb on - strand at 5568.828 kb on - strand at 5568.828 kb on - strand at 5568.828 kb on - strand at 5568.868 kb on - strand at 5568.922 kb on + strand at 5568.939 kb on - strand at 5568.944 kb on + strand at 5568.957 kb on - strand at 5568.964 kb on + strand at 5568.964 kb on + strand at 5568.965 kb on - strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.019 kb on + strand at 5569.019 kb on + strand at 5569.019 kb on + strand at 5569.019 kb on + strand at 5569.020 kb on - strand at 5569.020 kb on - strand at 5569.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 3.125 ug/ml remove 5,566,149 + Psyr_4697 0.52 +3.5 5,566,323 - Psyr_4697 0.70 -0.1 5,566,389 + Psyr_4697 0.77 -2.8 5,566,774 + +2.5 5,566,774 + -3.5 5,566,782 + -3.6 5,566,782 + +0.4 5,566,782 + -0.4 5,566,783 - -0.6 5,566,787 - -0.1 5,566,833 + +0.5 5,566,834 - -0.9 5,566,834 - -0.9 5,566,834 - -0.7 5,566,838 - +2.0 5,566,838 - -0.9 5,566,838 - +2.8 5,566,976 + -0.8 5,566,976 + -1.5 5,567,049 + -3.9 5,567,049 + +0.9 5,567,049 + +3.1 5,567,050 - -1.2 5,567,050 - +4.0 5,567,050 - +0.5 5,567,052 - +3.1 5,567,052 - +1.7 5,567,052 - -3.4 5,567,076 - +0.0 5,567,109 + -1.9 5,567,110 - -1.3 5,567,110 - +4.4 5,567,172 - -3.4 5,567,192 + -0.6 5,567,192 + +1.1 5,567,192 + +0.5 5,567,192 + -1.2 5,567,192 + +0.2 5,567,192 + +3.8 5,567,192 + -2.5 5,567,192 + +1.5 5,567,192 + +0.1 5,567,192 + +0.8 5,567,192 + -0.0 5,567,193 - -0.5 5,567,193 - +0.2 5,567,193 - +2.8 5,567,193 - +1.6 5,567,193 - +1.6 5,567,193 - +1.0 5,567,193 - -1.0 5,567,193 - +0.5 5,567,193 - -2.8 5,567,193 - +2.5 5,567,193 - +0.6 5,567,193 - -1.7 5,567,219 + +1.7 5,567,219 + +0.5 5,567,219 + -1.4 5,567,219 + +3.5 5,567,220 - +2.5 5,567,220 - -1.2 5,567,411 + Psyr_4698 0.30 +0.5 5,567,411 + Psyr_4698 0.30 +4.7 5,567,411 + Psyr_4698 0.30 +0.5 5,567,411 + Psyr_4698 0.30 +1.0 5,567,411 + Psyr_4698 0.30 -0.4 5,567,411 + Psyr_4698 0.30 -1.6 5,567,411 + Psyr_4698 0.30 +0.4 5,567,412 - Psyr_4698 0.30 -0.3 5,567,412 - Psyr_4698 0.30 -5.0 5,567,412 - Psyr_4698 0.30 +0.2 5,567,412 - Psyr_4698 0.30 -0.0 5,567,412 - Psyr_4698 0.30 +0.8 5,567,462 + Psyr_4698 0.36 -2.1 5,567,462 + Psyr_4698 0.36 -0.9 5,567,462 + Psyr_4698 0.36 +0.7 5,567,462 + Psyr_4698 0.36 -4.1 5,567,463 - Psyr_4698 0.36 -0.9 5,567,463 - Psyr_4698 0.36 +3.5 5,567,463 - Psyr_4698 0.36 +0.7 5,567,463 - Psyr_4698 0.36 +3.1 5,567,463 - Psyr_4698 0.36 +1.5 5,567,463 - Psyr_4698 0.36 +0.1 5,567,463 - Psyr_4698 0.36 -1.8 5,567,634 - Psyr_4698 0.55 -0.1 5,567,883 - Psyr_4698 0.83 -0.8 5,567,925 - Psyr_4698 0.88 +2.8 5,567,990 + +1.5 5,567,990 + +0.6 5,567,990 + -2.7 5,567,990 + -2.1 5,567,990 + +0.5 5,567,990 + -0.2 5,567,990 + +0.7 5,567,991 - -1.1 5,567,991 - -0.0 5,567,991 - +0.1 5,567,991 - -0.5 5,567,991 - -4.1 5,568,048 + -0.6 5,568,049 - -1.1 5,568,049 - -3.0 5,568,049 - -1.0 5,568,049 - -1.9 5,568,117 + -2.1 5,568,196 - -0.2 5,568,376 + Psyr_4699 0.27 -0.8 5,568,376 + Psyr_4699 0.27 +0.6 5,568,376 + Psyr_4699 0.27 -0.6 5,568,376 + Psyr_4699 0.27 +0.5 5,568,376 + Psyr_4699 0.27 -1.5 5,568,376 + Psyr_4699 0.27 -2.8 5,568,377 - Psyr_4699 0.27 +0.3 5,568,377 - Psyr_4699 0.27 +2.1 5,568,377 - Psyr_4699 0.27 -0.7 5,568,819 + +3.8 5,568,820 - -0.9 5,568,820 - -0.7 5,568,820 - -0.4 5,568,820 - +0.1 5,568,825 + -0.2 5,568,826 - -1.5 5,568,826 - +0.3 5,568,827 + -1.1 5,568,827 + +0.5 5,568,827 + +0.5 5,568,827 + -1.3 5,568,827 + +0.8 5,568,827 + -0.1 5,568,827 + -0.5 5,568,827 + -1.5 5,568,827 + -0.8 5,568,828 - +0.5 5,568,828 - +0.5 5,568,828 - +0.3 5,568,828 - -1.0 5,568,868 - +1.0 5,568,922 + -1.1 5,568,939 - -1.2 5,568,944 + -1.8 5,568,957 - -2.3 5,568,964 + +0.5 5,568,964 + -0.5 5,568,965 - -0.2 5,568,999 + -3.5 5,568,999 + -4.1 5,568,999 + +0.1 5,568,999 + +0.1 5,568,999 + +1.3 5,568,999 + +1.5 5,568,999 + -2.6 5,568,999 + +0.5 5,568,999 + -3.8 5,568,999 + +1.3 5,568,999 + -1.6 5,568,999 + +3.1 5,568,999 + -0.1 5,569,000 - +0.1 5,569,000 - +0.3 5,569,000 - +0.2 5,569,000 - -0.2 5,569,000 - -1.4 5,569,000 - +0.8 5,569,000 - +0.9 5,569,000 - -1.0 5,569,019 + -2.3 5,569,019 + -0.9 5,569,019 + +0.0 5,569,019 + -0.3 5,569,020 - -0.6 5,569,020 - -0.1 5,569,020 - -0.5
Or see this region's nucleotide sequence