Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3998

Experiment: KB with Acridine orange 3.125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3997 and Psyr_3998 overlap by 4 nucleotidesPsyr_3998 and Psyr_3999 are separated by 215 nucleotides Psyr_3997: Psyr_3997 - Heat shock protein Hsp70, at 4,759,883 to 4,761,577 _3997 Psyr_3998: Psyr_3998 - Heat shock protein DnaJ, N-terminal, at 4,761,574 to 4,763,121 _3998 Psyr_3999: Psyr_3999 - General substrate transporter:Major facilitator superfamily, at 4,763,337 to 4,764,662 _3999 Position (kb) 4761 4762 4763 4764Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4761.020 kb on + strand, within Psyr_3997at 4761.021 kb on - strand, within Psyr_3997at 4761.021 kb on - strand, within Psyr_3997at 4761.107 kb on - strand, within Psyr_3997at 4761.107 kb on - strand, within Psyr_3997at 4761.137 kb on - strand, within Psyr_3997at 4761.173 kb on - strand, within Psyr_3997at 4761.223 kb on + strand, within Psyr_3997at 4761.224 kb on - strand, within Psyr_3997at 4761.224 kb on - strand, within Psyr_3997at 4761.224 kb on - strand, within Psyr_3997at 4761.228 kb on - strand, within Psyr_3997at 4761.333 kb on + strand, within Psyr_3997at 4761.333 kb on + strand, within Psyr_3997at 4761.333 kb on + strand, within Psyr_3997at 4761.334 kb on - strand, within Psyr_3997at 4761.334 kb on - strand, within Psyr_3997at 4761.334 kb on - strand, within Psyr_3997at 4761.334 kb on - strand, within Psyr_3997at 4761.351 kb on + strand, within Psyr_3997at 4761.425 kb on + strandat 4761.425 kb on + strandat 4761.457 kb on + strandat 4761.459 kb on - strandat 4761.580 kb on + strandat 4761.580 kb on + strandat 4761.580 kb on + strandat 4761.580 kb on + strandat 4761.580 kb on + strandat 4761.580 kb on + strandat 4761.580 kb on + strandat 4761.581 kb on - strandat 4761.581 kb on - strandat 4761.581 kb on - strandat 4761.581 kb on - strandat 4761.593 kb on + strandat 4761.594 kb on - strandat 4761.641 kb on - strandat 4761.641 kb on - strandat 4761.641 kb on - strandat 4762.052 kb on - strand, within Psyr_3998at 4762.367 kb on - strand, within Psyr_3998at 4762.367 kb on - strand, within Psyr_3998at 4762.515 kb on + strand, within Psyr_3998at 4762.515 kb on + strand, within Psyr_3998at 4762.693 kb on + strand, within Psyr_3998at 4762.693 kb on + strand, within Psyr_3998at 4762.693 kb on + strand, within Psyr_3998at 4762.693 kb on + strand, within Psyr_3998at 4762.694 kb on - strand, within Psyr_3998at 4762.694 kb on - strand, within Psyr_3998at 4762.764 kb on + strand, within Psyr_3998at 4762.772 kb on + strand, within Psyr_3998at 4762.772 kb on + strand, within Psyr_3998at 4762.773 kb on - strand, within Psyr_3998at 4762.773 kb on - strand, within Psyr_3998at 4762.830 kb on - strand, within Psyr_3998at 4762.830 kb on - strand, within Psyr_3998at 4762.945 kb on + strand, within Psyr_3998at 4762.946 kb on - strand, within Psyr_3998at 4762.985 kb on - strandat 4763.035 kb on + strandat 4763.035 kb on + strandat 4763.035 kb on + strandat 4763.036 kb on - strandat 4763.106 kb on + strandat 4763.205 kb on + strandat 4763.206 kb on - strandat 4763.244 kb on - strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.279 kb on - strandat 4763.279 kb on - strandat 4763.282 kb on + strandat 4763.463 kb on + strandat 4763.463 kb on + strandat 4763.463 kb on + strandat 4763.463 kb on + strandat 4763.464 kb on - strandat 4763.464 kb on - strandat 4763.488 kb on - strand, within Psyr_3999at 4763.488 kb on - strand, within Psyr_3999at 4763.613 kb on + strand, within Psyr_3999at 4763.614 kb on - strand, within Psyr_3999at 4763.614 kb on - strand, within Psyr_3999at 4763.614 kb on - strand, within Psyr_3999at 4763.614 kb on - strand, within Psyr_3999at 4763.773 kb on - strand, within Psyr_3999at 4763.790 kb on + strand, within Psyr_3999at 4763.790 kb on + strand, within Psyr_3999at 4763.791 kb on - strand, within Psyr_3999at 4763.791 kb on - strand, within Psyr_3999at 4763.791 kb on - strand, within Psyr_3999at 4763.844 kb on + strand, within Psyr_3999at 4763.845 kb on - strand, within Psyr_3999at 4763.925 kb on + strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 3.125 ug/ml
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4,761,020 + Psyr_3997 0.67 -3.1
4,761,021 - Psyr_3997 0.67 +0.4
4,761,021 - Psyr_3997 0.67 +0.9
4,761,107 - Psyr_3997 0.72 -0.2
4,761,107 - Psyr_3997 0.72 -0.6
4,761,137 - Psyr_3997 0.74 -0.0
4,761,173 - Psyr_3997 0.76 -1.0
4,761,223 + Psyr_3997 0.79 -0.6
4,761,224 - Psyr_3997 0.79 -0.3
4,761,224 - Psyr_3997 0.79 +3.0
4,761,224 - Psyr_3997 0.79 +0.6
4,761,228 - Psyr_3997 0.79 +0.4
4,761,333 + Psyr_3997 0.86 -4.4
4,761,333 + Psyr_3997 0.86 -2.4
4,761,333 + Psyr_3997 0.86 -0.1
4,761,334 - Psyr_3997 0.86 -1.7
4,761,334 - Psyr_3997 0.86 -0.1
4,761,334 - Psyr_3997 0.86 -0.2
4,761,334 - Psyr_3997 0.86 +2.0
4,761,351 + Psyr_3997 0.87 -0.7
4,761,425 + +4.8
4,761,425 + -1.8
4,761,457 + +4.0
4,761,459 - -0.7
4,761,580 + +2.0
4,761,580 + -2.1
4,761,580 + -0.7
4,761,580 + -2.0
4,761,580 + +0.4
4,761,580 + +4.1
4,761,580 + -0.6
4,761,581 - +2.0
4,761,581 - +0.4
4,761,581 - +3.2
4,761,581 - +3.2
4,761,593 + -0.3
4,761,594 - +1.0
4,761,641 - +0.9
4,761,641 - -1.2
4,761,641 - +1.2
4,762,052 - Psyr_3998 0.31 +0.4
4,762,367 - Psyr_3998 0.51 -0.6
4,762,367 - Psyr_3998 0.51 +3.9
4,762,515 + Psyr_3998 0.61 +0.2
4,762,515 + Psyr_3998 0.61 +0.1
4,762,693 + Psyr_3998 0.72 +1.0
4,762,693 + Psyr_3998 0.72 -2.4
4,762,693 + Psyr_3998 0.72 -0.0
4,762,693 + Psyr_3998 0.72 -3.0
4,762,694 - Psyr_3998 0.72 -0.4
4,762,694 - Psyr_3998 0.72 -1.6
4,762,764 + Psyr_3998 0.77 +0.4
4,762,772 + Psyr_3998 0.77 +0.6
4,762,772 + Psyr_3998 0.77 +1.1
4,762,773 - Psyr_3998 0.77 -2.2
4,762,773 - Psyr_3998 0.77 +4.9
4,762,830 - Psyr_3998 0.81 -4.5
4,762,830 - Psyr_3998 0.81 -0.4
4,762,945 + Psyr_3998 0.89 +0.3
4,762,946 - Psyr_3998 0.89 +1.1
4,762,985 - -1.4
4,763,035 + +0.0
4,763,035 + +0.4
4,763,035 + +2.0
4,763,036 - -0.4
4,763,106 + -0.5
4,763,205 + -2.4
4,763,206 - -0.3
4,763,244 - +0.4
4,763,278 + +0.4
4,763,278 + -0.1
4,763,278 + +0.0
4,763,279 - +0.6
4,763,279 - +1.7
4,763,282 + -0.6
4,763,463 + -3.0
4,763,463 + +4.7
4,763,463 + +0.4
4,763,463 + +4.7
4,763,464 - +0.9
4,763,464 - -0.5
4,763,488 - Psyr_3999 0.11 -0.2
4,763,488 - Psyr_3999 0.11 +1.0
4,763,613 + Psyr_3999 0.21 +3.2
4,763,614 - Psyr_3999 0.21 +4.2
4,763,614 - Psyr_3999 0.21 -0.6
4,763,614 - Psyr_3999 0.21 -0.6
4,763,614 - Psyr_3999 0.21 -0.4
4,763,773 - Psyr_3999 0.33 +4.4
4,763,790 + Psyr_3999 0.34 -2.9
4,763,790 + Psyr_3999 0.34 +0.6
4,763,791 - Psyr_3999 0.34 +0.4
4,763,791 - Psyr_3999 0.34 -0.9
4,763,791 - Psyr_3999 0.34 +2.0
4,763,844 + Psyr_3999 0.38 +0.7
4,763,845 - Psyr_3999 0.38 +0.6
4,763,925 + Psyr_3999 0.44 +0.6
4,763,926 - Psyr_3999 0.44 +1.0
4,763,926 - Psyr_3999 0.44 +0.6
4,763,926 - Psyr_3999 0.44 +1.7
4,763,926 - Psyr_3999 0.44 +0.4
4,763,926 - Psyr_3999 0.44 -0.2
4,763,926 - Psyr_3999 0.44 +1.4
4,763,926 - Psyr_3999 0.44 +4.3
4,763,926 - Psyr_3999 0.44 -2.6
4,763,926 - Psyr_3999 0.44 -0.0
4,763,926 - Psyr_3999 0.44 -0.4

Or see this region's nucleotide sequence