Experiment: KB with Acridine orange 3.125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3962 and Psyr_3963 are separated by 111 nucleotides Psyr_3963 and Psyr_3964 are separated by 10 nucleotides Psyr_3964 and Psyr_3965 overlap by 8 nucleotides
Psyr_3962: Psyr_3962 - Glycine cleavage T protein (aminomethyl transferase), at 4,709,531 to 4,710,478
_3962
Psyr_3963: Psyr_3963 - conserved hypothetical protein, at 4,710,590 to 4,711,411
_3963
Psyr_3964: Psyr_3964 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,711,422 to 4,712,804
_3964
Psyr_3965: Psyr_3965 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,712,797 to 4,713,468
_3965
Position (kb) 4711
4712
4713 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4710.444 kb on - strand at 4710.503 kb on - strand at 4710.503 kb on - strand at 4710.503 kb on - strand at 4710.719 kb on - strand, within Psyr_3963 at 4710.719 kb on - strand, within Psyr_3963 at 4710.857 kb on + strand, within Psyr_3963 at 4710.857 kb on + strand, within Psyr_3963 at 4710.857 kb on + strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.977 kb on + strand, within Psyr_3963 at 4710.977 kb on + strand, within Psyr_3963 at 4710.977 kb on + strand, within Psyr_3963 at 4710.978 kb on - strand, within Psyr_3963 at 4710.995 kb on + strand, within Psyr_3963 at 4710.995 kb on + strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.244 kb on + strand, within Psyr_3963 at 4711.244 kb on + strand, within Psyr_3963 at 4711.245 kb on - strand, within Psyr_3963 at 4711.245 kb on - strand, within Psyr_3963 at 4711.288 kb on + strand, within Psyr_3963 at 4711.288 kb on + strand, within Psyr_3963 at 4711.288 kb on + strand, within Psyr_3963 at 4711.406 kb on + strand at 4711.406 kb on + strand at 4711.406 kb on + strand at 4711.407 kb on - strand at 4711.410 kb on - strand at 4711.446 kb on + strand at 4711.447 kb on - strand at 4711.629 kb on + strand, within Psyr_3964 at 4711.629 kb on + strand, within Psyr_3964 at 4711.630 kb on - strand, within Psyr_3964 at 4711.645 kb on + strand, within Psyr_3964 at 4711.645 kb on + strand, within Psyr_3964 at 4711.645 kb on + strand, within Psyr_3964 at 4711.646 kb on - strand, within Psyr_3964 at 4711.713 kb on + strand, within Psyr_3964 at 4711.714 kb on - strand, within Psyr_3964 at 4712.106 kb on - strand, within Psyr_3964 at 4712.205 kb on - strand, within Psyr_3964 at 4712.238 kb on + strand, within Psyr_3964 at 4712.239 kb on - strand, within Psyr_3964 at 4712.431 kb on + strand, within Psyr_3964 at 4712.432 kb on - strand, within Psyr_3964 at 4712.443 kb on + strand, within Psyr_3964 at 4712.551 kb on + strand, within Psyr_3964 at 4712.552 kb on - strand, within Psyr_3964 at 4712.552 kb on - strand, within Psyr_3964 at 4712.552 kb on - strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.554 kb on + strand, within Psyr_3964 at 4712.555 kb on - strand, within Psyr_3964 at 4712.555 kb on - strand, within Psyr_3964 at 4712.555 kb on - strand, within Psyr_3964 at 4712.555 kb on - strand, within Psyr_3964 at 4712.555 kb on - strand, within Psyr_3964 at 4712.555 kb on - strand, within Psyr_3964 at 4712.555 kb on - strand, within Psyr_3964 at 4712.555 kb on - strand, within Psyr_3964 at 4712.575 kb on + strand, within Psyr_3964 at 4712.585 kb on + strand, within Psyr_3964 at 4712.684 kb on - strand at 4712.716 kb on + strand at 4712.799 kb on - strand at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.891 kb on + strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4712.892 kb on - strand, within Psyr_3965 at 4713.068 kb on + strand, within Psyr_3965 at 4713.177 kb on - strand, within Psyr_3965 at 4713.335 kb on + strand, within Psyr_3965 at 4713.335 kb on + strand, within Psyr_3965 at 4713.335 kb on + strand, within Psyr_3965 at 4713.695 kb on - strand at 4713.703 kb on + strand at 4713.703 kb on + strand at 4713.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 3.125 ug/ml remove 4,710,444 - -1.0 4,710,503 - -1.2 4,710,503 - +0.1 4,710,503 - -1.8 4,710,719 - Psyr_3963 0.16 -0.2 4,710,719 - Psyr_3963 0.16 +4.8 4,710,857 + Psyr_3963 0.32 +0.4 4,710,857 + Psyr_3963 0.32 -3.4 4,710,857 + Psyr_3963 0.32 -0.5 4,710,858 - Psyr_3963 0.33 +1.6 4,710,858 - Psyr_3963 0.33 +0.4 4,710,858 - Psyr_3963 0.33 -1.6 4,710,858 - Psyr_3963 0.33 -2.7 4,710,858 - Psyr_3963 0.33 +2.8 4,710,977 + Psyr_3963 0.47 +2.8 4,710,977 + Psyr_3963 0.47 +4.1 4,710,977 + Psyr_3963 0.47 -1.5 4,710,978 - Psyr_3963 0.47 -3.4 4,710,995 + Psyr_3963 0.49 -3.2 4,710,995 + Psyr_3963 0.49 +4.0 4,711,071 - Psyr_3963 0.59 -0.4 4,711,071 - Psyr_3963 0.59 +0.4 4,711,071 - Psyr_3963 0.59 +0.2 4,711,071 - Psyr_3963 0.59 -2.7 4,711,071 - Psyr_3963 0.59 +0.4 4,711,244 + Psyr_3963 0.80 +4.4 4,711,244 + Psyr_3963 0.80 +0.1 4,711,245 - Psyr_3963 0.80 +0.6 4,711,245 - Psyr_3963 0.80 -4.7 4,711,288 + Psyr_3963 0.85 -3.5 4,711,288 + Psyr_3963 0.85 -0.2 4,711,288 + Psyr_3963 0.85 -0.4 4,711,406 + -0.6 4,711,406 + -1.3 4,711,406 + -0.7 4,711,407 - -2.2 4,711,410 - +1.8 4,711,446 + -0.8 4,711,447 - +1.0 4,711,629 + Psyr_3964 0.15 -1.7 4,711,629 + Psyr_3964 0.15 -0.7 4,711,630 - Psyr_3964 0.15 -0.9 4,711,645 + Psyr_3964 0.16 -1.0 4,711,645 + Psyr_3964 0.16 +0.4 4,711,645 + Psyr_3964 0.16 +0.7 4,711,646 - Psyr_3964 0.16 +1.4 4,711,713 + Psyr_3964 0.21 +1.0 4,711,714 - Psyr_3964 0.21 +3.2 4,712,106 - Psyr_3964 0.49 -2.9 4,712,205 - Psyr_3964 0.57 +0.0 4,712,238 + Psyr_3964 0.59 -0.9 4,712,239 - Psyr_3964 0.59 +3.4 4,712,431 + Psyr_3964 0.73 -0.2 4,712,432 - Psyr_3964 0.73 +4.2 4,712,443 + Psyr_3964 0.74 -0.0 4,712,551 + Psyr_3964 0.82 -1.1 4,712,552 - Psyr_3964 0.82 +1.4 4,712,552 - Psyr_3964 0.82 -0.4 4,712,552 - Psyr_3964 0.82 +0.9 4,712,554 + Psyr_3964 0.82 -1.0 4,712,554 + Psyr_3964 0.82 +2.0 4,712,554 + Psyr_3964 0.82 +3.9 4,712,554 + Psyr_3964 0.82 -1.2 4,712,554 + Psyr_3964 0.82 +0.9 4,712,554 + Psyr_3964 0.82 +1.9 4,712,554 + Psyr_3964 0.82 -1.0 4,712,554 + Psyr_3964 0.82 +3.2 4,712,554 + Psyr_3964 0.82 +0.7 4,712,554 + Psyr_3964 0.82 +3.0 4,712,554 + Psyr_3964 0.82 -3.4 4,712,554 + Psyr_3964 0.82 -0.1 4,712,555 - Psyr_3964 0.82 +2.4 4,712,555 - Psyr_3964 0.82 -1.4 4,712,555 - Psyr_3964 0.82 +0.7 4,712,555 - Psyr_3964 0.82 +0.2 4,712,555 - Psyr_3964 0.82 +0.9 4,712,555 - Psyr_3964 0.82 -0.2 4,712,555 - Psyr_3964 0.82 +3.4 4,712,555 - Psyr_3964 0.82 +0.7 4,712,575 + Psyr_3964 0.83 -1.5 4,712,585 + Psyr_3964 0.84 +0.9 4,712,684 - +0.4 4,712,716 + -1.6 4,712,799 - -1.0 4,712,891 + Psyr_3965 0.14 +1.7 4,712,891 + Psyr_3965 0.14 +0.1 4,712,891 + Psyr_3965 0.14 -4.4 4,712,891 + Psyr_3965 0.14 +0.5 4,712,891 + Psyr_3965 0.14 +2.4 4,712,891 + Psyr_3965 0.14 +1.4 4,712,891 + Psyr_3965 0.14 -1.8 4,712,891 + Psyr_3965 0.14 -2.5 4,712,891 + Psyr_3965 0.14 +3.4 4,712,891 + Psyr_3965 0.14 +2.3 4,712,891 + Psyr_3965 0.14 +0.2 4,712,891 + Psyr_3965 0.14 +1.2 4,712,891 + Psyr_3965 0.14 -1.8 4,712,891 + Psyr_3965 0.14 +3.0 4,712,892 - Psyr_3965 0.14 +0.9 4,712,892 - Psyr_3965 0.14 -0.1 4,712,892 - Psyr_3965 0.14 +0.5 4,712,892 - Psyr_3965 0.14 -0.8 4,712,892 - Psyr_3965 0.14 +1.4 4,712,892 - Psyr_3965 0.14 -0.7 4,712,892 - Psyr_3965 0.14 -4.3 4,712,892 - Psyr_3965 0.14 +2.7 4,712,892 - Psyr_3965 0.14 +3.7 4,712,892 - Psyr_3965 0.14 +2.0 4,712,892 - Psyr_3965 0.14 -2.6 4,713,068 + Psyr_3965 0.40 +0.5 4,713,177 - Psyr_3965 0.57 +0.1 4,713,335 + Psyr_3965 0.80 -3.0 4,713,335 + Psyr_3965 0.80 -3.9 4,713,335 + Psyr_3965 0.80 -0.2 4,713,695 - +3.4 4,713,703 + -3.2 4,713,703 + -2.1 4,713,703 + -2.1
Or see this region's nucleotide sequence