Experiment: KB with Acridine orange 3.125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3109 and Psyr_3110 are separated by 168 nucleotides Psyr_3110 and Psyr_3111 are separated by 10 nucleotides
Psyr_3109: Psyr_3109 - conserved hypothetical protein, at 3,725,843 to 3,727,546
_3109
Psyr_3110: Psyr_3110 - Nucleoside 2-deoxyribosyltransferase, at 3,727,715 to 3,728,233
_3110
Psyr_3111: Psyr_3111 - transcriptional regulator, LysR family, at 3,728,244 to 3,729,146
_3111
Position (kb) 3727
3728
3729 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 3726.718 kb on - strand, within Psyr_3109 at 3726.718 kb on - strand, within Psyr_3109 at 3726.732 kb on + strand, within Psyr_3109 at 3727.041 kb on + strand, within Psyr_3109 at 3727.041 kb on + strand, within Psyr_3109 at 3727.042 kb on - strand, within Psyr_3109 at 3727.042 kb on - strand, within Psyr_3109 at 3727.140 kb on + strand, within Psyr_3109 at 3727.140 kb on + strand, within Psyr_3109 at 3727.513 kb on - strand at 3727.515 kb on + strand at 3727.541 kb on - strand at 3727.541 kb on - strand at 3727.562 kb on - strand at 3727.562 kb on - strand at 3727.653 kb on + strand at 3727.654 kb on - strand at 3727.677 kb on - strand at 3727.694 kb on - strand at 3727.694 kb on - strand at 3727.714 kb on + strand at 3727.733 kb on + strand at 3727.734 kb on - strand at 3727.734 kb on - strand at 3727.734 kb on - strand at 3727.784 kb on + strand, within Psyr_3110 at 3727.826 kb on + strand, within Psyr_3110 at 3728.024 kb on + strand, within Psyr_3110 at 3728.024 kb on + strand, within Psyr_3110 at 3728.025 kb on - strand, within Psyr_3110 at 3728.025 kb on - strand, within Psyr_3110 at 3728.025 kb on - strand, within Psyr_3110 at 3728.095 kb on + strand, within Psyr_3110 at 3728.096 kb on - strand, within Psyr_3110 at 3728.195 kb on + strand at 3728.195 kb on + strand at 3728.196 kb on - strand at 3728.318 kb on - strand at 3728.769 kb on + strand, within Psyr_3111 at 3728.770 kb on - strand, within Psyr_3111 at 3728.836 kb on + strand, within Psyr_3111 at 3728.868 kb on + strand, within Psyr_3111 at 3728.869 kb on - strand, within Psyr_3111 at 3728.869 kb on - strand, within Psyr_3111 at 3728.869 kb on - strand, within Psyr_3111 at 3728.869 kb on - strand, within Psyr_3111 at 3728.869 kb on - strand, within Psyr_3111 at 3729.113 kb on + strand at 3729.124 kb on + strand at 3729.125 kb on - strand at 3729.125 kb on - strand at 3729.125 kb on - strand at 3729.222 kb on - strand at 3729.222 kb on - strand at 3729.222 kb on - strand at 3729.222 kb on - strand at 3729.222 kb on - strand at 3729.222 kb on - strand at 3729.222 kb on - strand at 3729.230 kb on + strand at 3729.230 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 3.125 ug/ml remove 3,726,718 - Psyr_3109 0.51 +1.1 3,726,718 - Psyr_3109 0.51 +0.2 3,726,732 + Psyr_3109 0.52 +3.0 3,727,041 + Psyr_3109 0.70 +0.2 3,727,041 + Psyr_3109 0.70 +0.9 3,727,042 - Psyr_3109 0.70 -0.8 3,727,042 - Psyr_3109 0.70 +0.2 3,727,140 + Psyr_3109 0.76 +0.4 3,727,140 + Psyr_3109 0.76 +3.5 3,727,513 - -0.9 3,727,515 + +0.2 3,727,541 - +0.8 3,727,541 - -1.1 3,727,562 - -0.5 3,727,562 - -1.3 3,727,653 + -0.1 3,727,654 - -0.2 3,727,677 - +2.8 3,727,694 - +2.8 3,727,694 - -1.6 3,727,714 + +1.1 3,727,733 + -0.4 3,727,734 - -0.3 3,727,734 - +1.1 3,727,734 - +0.2 3,727,784 + Psyr_3110 0.13 +0.1 3,727,826 + Psyr_3110 0.21 -0.8 3,728,024 + Psyr_3110 0.60 +4.2 3,728,024 + Psyr_3110 0.60 -1.7 3,728,025 - Psyr_3110 0.60 -2.6 3,728,025 - Psyr_3110 0.60 +3.4 3,728,025 - Psyr_3110 0.60 -2.8 3,728,095 + Psyr_3110 0.73 +0.6 3,728,096 - Psyr_3110 0.73 -1.3 3,728,195 + +0.2 3,728,195 + -1.2 3,728,196 - +3.0 3,728,318 - -4.1 3,728,769 + Psyr_3111 0.58 +3.5 3,728,770 - Psyr_3111 0.58 -4.0 3,728,836 + Psyr_3111 0.66 +0.2 3,728,868 + Psyr_3111 0.69 -3.4 3,728,869 - Psyr_3111 0.69 +0.6 3,728,869 - Psyr_3111 0.69 -0.4 3,728,869 - Psyr_3111 0.69 -1.0 3,728,869 - Psyr_3111 0.69 -1.4 3,728,869 - Psyr_3111 0.69 +0.4 3,729,113 + -2.6 3,729,124 + -1.9 3,729,125 - -1.4 3,729,125 - -0.1 3,729,125 - -0.6 3,729,222 - -0.7 3,729,222 - -0.5 3,729,222 - -1.6 3,729,222 - -1.4 3,729,222 - -1.0 3,729,222 - +0.2 3,729,222 - -1.2 3,729,230 + +0.8 3,729,230 + -3.4
Or see this region's nucleotide sequence