Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2993

Experiment: KB with Acridine orange 3.125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 3.125 ug/ml
3,584,324	-		Psyr_2992	0.41	-1.2
3,584,324	-		Psyr_2992	0.41	-1.9
3,584,328	+		Psyr_2992	0.41	+0.1
3,584,329	-		Psyr_2992	0.41	+4.3
3,584,387	+		Psyr_2992	0.45	-1.3
3,584,409	+		Psyr_2992	0.46	-1.0
3,584,478	+		Psyr_2992	0.51	-0.6
3,584,478	+		Psyr_2992	0.51	-1.1
3,584,479	-		Psyr_2992	0.51	+1.8
3,584,667	+		Psyr_2992	0.62	-0.7
3,584,667	+		Psyr_2992	0.62	-1.0
3,584,667	+		Psyr_2992	0.62	-2.4
3,584,667	+		Psyr_2992	0.62	-1.6
3,584,668	-		Psyr_2992	0.63	+1.5
3,584,668	-		Psyr_2992	0.63	+0.2
3,584,668	-		Psyr_2992	0.63	-2.0
3,584,982	+		Psyr_2992	0.82	+0.5
3,584,982	+		Psyr_2992	0.82	+3.2
3,584,982	+		Psyr_2992	0.82	+1.2
3,584,983	-		Psyr_2992	0.82	-3.0
3,584,983	-		Psyr_2992	0.82	+0.8
3,585,020	+		Psyr_2992	0.85	-1.3
3,585,093	+		Psyr_2992	0.89	-4.2
3,585,093	+		Psyr_2992	0.89	+0.4
3,585,199	+				-2.5
3,585,200	-				+0.7
3,585,261	+				+0.2
3,585,261	+				+3.9
3,585,261	+				+3.8
3,585,261	+				+0.6
3,585,262	-				+3.0
3,585,262	-				-0.9
3,585,264	+				-2.1
3,585,264	+				-1.6
3,585,264	+				+1.1
3,585,265	-				+0.7
3,585,265	-				+0.2
3,585,278	-				-0.8
3,585,294	+				-1.1
3,585,304	-				-0.3
3,585,443	+				-0.4
3,585,444	-				+0.7
3,585,577	+		Psyr_2993	0.16	+0.8
3,585,578	-		Psyr_2993	0.16	+1.2
3,585,578	-		Psyr_2993	0.16	+0.1
3,585,631	+		Psyr_2993	0.19	-0.2
3,585,631	+		Psyr_2993	0.19	+1.0
3,585,631	+		Psyr_2993	0.19	+0.2
3,585,631	+		Psyr_2993	0.19	-1.3
3,585,631	+		Psyr_2993	0.19	-0.7
3,585,632	-		Psyr_2993	0.19	-0.2
3,585,632	-		Psyr_2993	0.19	+1.3
3,585,632	-		Psyr_2993	0.19	+2.9
3,585,632	-		Psyr_2993	0.19	+0.2
3,585,632	-		Psyr_2993	0.19	+1.2
3,585,632	-		Psyr_2993	0.19	-0.5
3,585,781	+		Psyr_2993	0.27	+0.2
3,585,782	-		Psyr_2993	0.27	+1.3
3,585,800	-		Psyr_2993	0.28	+1.5
3,585,800	-		Psyr_2993	0.28	+0.4
3,585,878	-		Psyr_2993	0.33	-0.8
3,585,878	-		Psyr_2993	0.33	+0.2
3,585,878	-		Psyr_2993	0.33	+2.5
3,585,904	+		Psyr_2993	0.34	-4.5
3,585,904	+		Psyr_2993	0.34	-1.5
3,585,904	+		Psyr_2993	0.34	+0.2
3,585,905	-		Psyr_2993	0.34	-3.6
3,585,905	-		Psyr_2993	0.34	+1.1
3,585,916	+		Psyr_2993	0.35	-0.9
3,586,264	+		Psyr_2993	0.54	+0.2
3,586,264	+		Psyr_2993	0.54	-3.7
3,586,265	-		Psyr_2993	0.54	-1.1
3,586,265	-		Psyr_2993	0.54	+0.2
3,586,330	+		Psyr_2993	0.58	+0.7
3,586,360	-		Psyr_2993	0.59	+0.2
3,586,754	+		Psyr_2993	0.81	+3.5
3,586,754	+		Psyr_2993	0.81	+2.5
3,586,754	+		Psyr_2993	0.81	-2.3
3,586,754	+		Psyr_2993	0.81	+3.9
3,586,754	+		Psyr_2993	0.81	-0.9
3,586,754	+		Psyr_2993	0.81	-0.5
3,586,754	+		Psyr_2993	0.81	+0.9
3,586,754	+		Psyr_2993	0.81	-1.0
3,586,754	+		Psyr_2993	0.81	-0.4
3,586,754	+		Psyr_2993	0.81	-2.1
3,586,755	-		Psyr_2993	0.81	+0.2
3,586,755	-		Psyr_2993	0.81	+0.1
3,586,755	-		Psyr_2993	0.81	+3.7
3,586,755	-		Psyr_2993	0.81	-0.5
3,586,755	-		Psyr_2993	0.81	-0.6
3,586,786	+		Psyr_2993	0.83	-0.5
3,586,786	+		Psyr_2993	0.83	+2.8
3,586,787	-		Psyr_2993	0.83	-0.6
3,586,787	-		Psyr_2993	0.83	+1.7
3,586,861	-		Psyr_2993	0.87	-0.2
3,586,982	+				-0.6
3,586,983	-				+0.8
3,587,039	-				+3.0
3,587,039	-				-1.8
3,587,365	-		Psyr_2994	0.13	+3.2
3,587,365	-		Psyr_2994	0.13	-2.0
3,587,564	+		Psyr_2994	0.23	-2.8
3,587,715	-		Psyr_2994	0.30	+0.7
3,587,904	-		Psyr_2994	0.39	-2.0