Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2211

Experiment: KB with Acridine orange 3.125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2210 and Psyr_2211 overlap by 4 nucleotidesPsyr_2211 and Psyr_2212 are separated by 196 nucleotides Psyr_2210: Psyr_2210 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 2,568,228 to 2,569,187 _2210 Psyr_2211: Psyr_2211 - monooxygenase, NtaA/SnaA/SoxA family, at 2,569,184 to 2,570,530 _2211 Psyr_2212: Psyr_2212 - Arginase/agmatinase/formiminoglutamase, at 2,570,727 to 2,571,617 _2212 Position (kb) 2569 2570 2571Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2568.379 kb on + strand, within Psyr_2210at 2568.380 kb on - strand, within Psyr_2210at 2568.380 kb on - strand, within Psyr_2210at 2568.759 kb on - strand, within Psyr_2210at 2568.932 kb on - strand, within Psyr_2210at 2569.227 kb on + strandat 2569.282 kb on - strandat 2569.789 kb on - strand, within Psyr_2211at 2569.789 kb on - strand, within Psyr_2211at 2569.791 kb on + strand, within Psyr_2211at 2570.232 kb on + strand, within Psyr_2211at 2570.232 kb on + strand, within Psyr_2211at 2570.233 kb on - strand, within Psyr_2211at 2570.509 kb on + strandat 2570.524 kb on + strandat 2570.525 kb on - strandat 2570.560 kb on + strandat 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.133 kb on + strand, within Psyr_2212at 2571.134 kb on - strand, within Psyr_2212at 2571.134 kb on - strand, within Psyr_2212at 2571.134 kb on - strand, within Psyr_2212at 2571.134 kb on - strand, within Psyr_2212at 2571.134 kb on - strand, within Psyr_2212at 2571.134 kb on - strand, within Psyr_2212at 2571.134 kb on - strand, within Psyr_2212at 2571.134 kb on - strand, within Psyr_2212at 2571.134 kb on - strand, within Psyr_2212at 2571.134 kb on - strand, within Psyr_2212at 2571.314 kb on - strand, within Psyr_2212

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 3.125 ug/ml
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2,568,379 + Psyr_2210 0.16 -0.0
2,568,380 - Psyr_2210 0.16 -4.2
2,568,380 - Psyr_2210 0.16 -2.1
2,568,759 - Psyr_2210 0.55 -2.9
2,568,932 - Psyr_2210 0.73 +0.2
2,569,227 + -0.8
2,569,282 - -0.1
2,569,789 - Psyr_2211 0.45 -0.9
2,569,789 - Psyr_2211 0.45 -0.5
2,569,791 + Psyr_2211 0.45 -2.1
2,570,232 + Psyr_2211 0.78 +0.2
2,570,232 + Psyr_2211 0.78 -0.1
2,570,233 - Psyr_2211 0.78 +4.5
2,570,509 + -1.9
2,570,524 + +0.2
2,570,525 - -3.1
2,570,560 + -0.7
2,571,133 + Psyr_2212 0.46 -0.7
2,571,133 + Psyr_2212 0.46 +0.2
2,571,133 + Psyr_2212 0.46 -1.4
2,571,133 + Psyr_2212 0.46 -3.6
2,571,133 + Psyr_2212 0.46 -0.7
2,571,133 + Psyr_2212 0.46 +0.2
2,571,133 + Psyr_2212 0.46 -3.6
2,571,133 + Psyr_2212 0.46 -3.4
2,571,133 + Psyr_2212 0.46 -3.9
2,571,133 + Psyr_2212 0.46 -1.3
2,571,133 + Psyr_2212 0.46 -0.6
2,571,133 + Psyr_2212 0.46 -0.4
2,571,133 + Psyr_2212 0.46 +0.1
2,571,133 + Psyr_2212 0.46 -1.8
2,571,134 - Psyr_2212 0.46 +0.2
2,571,134 - Psyr_2212 0.46 -3.5
2,571,134 - Psyr_2212 0.46 +0.4
2,571,134 - Psyr_2212 0.46 +3.4
2,571,134 - Psyr_2212 0.46 -0.5
2,571,134 - Psyr_2212 0.46 -0.9
2,571,134 - Psyr_2212 0.46 +1.1
2,571,134 - Psyr_2212 0.46 -2.0
2,571,134 - Psyr_2212 0.46 -0.1
2,571,134 - Psyr_2212 0.46 +0.2
2,571,314 - Psyr_2212 0.66 -0.7

Or see this region's nucleotide sequence