Experiment: KB with Acridine orange 3.125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2210 and Psyr_2211 overlap by 4 nucleotides Psyr_2211 and Psyr_2212 are separated by 196 nucleotides
Psyr_2210: Psyr_2210 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 2,568,228 to 2,569,187
_2210
Psyr_2211: Psyr_2211 - monooxygenase, NtaA/SnaA/SoxA family, at 2,569,184 to 2,570,530
_2211
Psyr_2212: Psyr_2212 - Arginase/agmatinase/formiminoglutamase, at 2,570,727 to 2,571,617
_2212
Position (kb)
2569
2570
2571 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2568.379 kb on + strand, within Psyr_2210 at 2568.380 kb on - strand, within Psyr_2210 at 2568.380 kb on - strand, within Psyr_2210 at 2568.759 kb on - strand, within Psyr_2210 at 2568.932 kb on - strand, within Psyr_2210 at 2569.227 kb on + strand at 2569.282 kb on - strand at 2569.789 kb on - strand, within Psyr_2211 at 2569.789 kb on - strand, within Psyr_2211 at 2569.791 kb on + strand, within Psyr_2211 at 2570.232 kb on + strand, within Psyr_2211 at 2570.232 kb on + strand, within Psyr_2211 at 2570.233 kb on - strand, within Psyr_2211 at 2570.509 kb on + strand at 2570.524 kb on + strand at 2570.525 kb on - strand at 2570.560 kb on + strand at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.133 kb on + strand, within Psyr_2212 at 2571.134 kb on - strand, within Psyr_2212 at 2571.134 kb on - strand, within Psyr_2212 at 2571.134 kb on - strand, within Psyr_2212 at 2571.134 kb on - strand, within Psyr_2212 at 2571.134 kb on - strand, within Psyr_2212 at 2571.134 kb on - strand, within Psyr_2212 at 2571.134 kb on - strand, within Psyr_2212 at 2571.134 kb on - strand, within Psyr_2212 at 2571.134 kb on - strand, within Psyr_2212 at 2571.134 kb on - strand, within Psyr_2212 at 2571.314 kb on - strand, within Psyr_2212
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 3.125 ug/ml remove 2,568,379 + Psyr_2210 0.16 -0.0 2,568,380 - Psyr_2210 0.16 -4.2 2,568,380 - Psyr_2210 0.16 -2.1 2,568,759 - Psyr_2210 0.55 -2.9 2,568,932 - Psyr_2210 0.73 +0.2 2,569,227 + -0.8 2,569,282 - -0.1 2,569,789 - Psyr_2211 0.45 -0.9 2,569,789 - Psyr_2211 0.45 -0.5 2,569,791 + Psyr_2211 0.45 -2.1 2,570,232 + Psyr_2211 0.78 +0.2 2,570,232 + Psyr_2211 0.78 -0.1 2,570,233 - Psyr_2211 0.78 +4.5 2,570,509 + -1.9 2,570,524 + +0.2 2,570,525 - -3.1 2,570,560 + -0.7 2,571,133 + Psyr_2212 0.46 -0.7 2,571,133 + Psyr_2212 0.46 +0.2 2,571,133 + Psyr_2212 0.46 -1.4 2,571,133 + Psyr_2212 0.46 -3.6 2,571,133 + Psyr_2212 0.46 -0.7 2,571,133 + Psyr_2212 0.46 +0.2 2,571,133 + Psyr_2212 0.46 -3.6 2,571,133 + Psyr_2212 0.46 -3.4 2,571,133 + Psyr_2212 0.46 -3.9 2,571,133 + Psyr_2212 0.46 -1.3 2,571,133 + Psyr_2212 0.46 -0.6 2,571,133 + Psyr_2212 0.46 -0.4 2,571,133 + Psyr_2212 0.46 +0.1 2,571,133 + Psyr_2212 0.46 -1.8 2,571,134 - Psyr_2212 0.46 +0.2 2,571,134 - Psyr_2212 0.46 -3.5 2,571,134 - Psyr_2212 0.46 +0.4 2,571,134 - Psyr_2212 0.46 +3.4 2,571,134 - Psyr_2212 0.46 -0.5 2,571,134 - Psyr_2212 0.46 -0.9 2,571,134 - Psyr_2212 0.46 +1.1 2,571,134 - Psyr_2212 0.46 -2.0 2,571,134 - Psyr_2212 0.46 -0.1 2,571,134 - Psyr_2212 0.46 +0.2 2,571,314 - Psyr_2212 0.66 -0.7
Or see this region's nucleotide sequence