Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1735
Experiment: KB with Acridine orange 3.125 ug/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Acridine orange 3.125 ug/ml |
---|---|---|---|---|---|
remove | |||||
1,970,463 | + | -1.3 | |||
1,970,463 | + | +0.3 | |||
1,971,884 | + | +1.5 | |||
1,971,884 | + | +0.6 | |||
1,971,884 | + | +5.5 | |||
1,971,884 | + | -1.6 | |||
1,971,885 | - | +1.5 | |||
1,972,002 | + | +1.9 | |||
1,972,002 | + | -0.5 | |||
1,972,003 | - | +0.5 | |||
1,972,003 | - | -1.1 | |||
1,972,280 | + | Psyr_1736 | 0.17 | -0.8 | |
1,972,419 | + | Psyr_1736 | 0.24 | -1.6 | |
1,972,419 | + | Psyr_1736 | 0.24 | -1.2 | |
1,972,490 | + | Psyr_1736 | 0.28 | +3.1 | |
1,972,491 | - | Psyr_1736 | 0.28 | +1.4 | |
1,972,491 | - | Psyr_1736 | 0.28 | -1.2 | |
1,972,491 | - | Psyr_1736 | 0.28 | -1.9 | |
1,972,491 | - | Psyr_1736 | 0.28 | +3.5 | |
1,972,491 | - | Psyr_1736 | 0.28 | +1.1 | |
1,972,491 | - | Psyr_1736 | 0.28 | +3.1 |
Or see this region's nucleotide sequence